Genome-wide analysis of the salmonella Fis regulon and its regulatory mechanism on pathogenicity islands

scientific article

Genome-wide analysis of the salmonella Fis regulon and its regulatory mechanism on pathogenicity islands is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2013PLoSO...864688W
P356DOI10.1371/JOURNAL.PONE.0064688
P932PMC publication ID3662779
P698PubMed publication ID23717649
P5875ResearchGate publication ID236959735

P2093author name stringHui Wang
Bin Liu
Lei Wang
Quan Wang
P2860cites workDeep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, HfqQ21145046
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Q22122369
TopHat: discovering splice junctions with RNA-SeqQ24655505
Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimuriumQ24671023
MEME: discovering and analyzing DNA and protein sequence motifsQ24680110
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimuriumQ24683356
Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coliQ24684769
The shape of the DNA minor groove directs binding by the DNA-bending protein FisQ27660559
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Microbial production of vitamin B12Q28213074
Direct interaction of endothelial nitric-oxide synthase and caveolin-1 inhibits synthase activityQ28244026
MEME SUITE: tools for motif discovery and searchingQ29547204
Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coliQ29615309
Asymmetric substitution patterns in the two DNA strands of bacteriaQ29618276
Virulence potential of five major pathogenicity islands (SPI-1 to SPI-5) of Salmonella enterica serovar Enteritidis for chickensQ33519750
Control of Salmonella pathogenicity island-2 gene expressionQ33584937
The ability of Salmonella to enter mammalian cells is affected by bacterial growth stateQ33616743
Repression by binding of H-NS within the transcription unit.Q52579807
FIS is a regulator of metabolism in Escherichia coli.Q53004745
Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation.Q53855219
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.Q54450677
The organization of the fuc regulon specifying L-fucose dissimilation in Escherichia coli K12 as determined by gene cloning.Q54758162
Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrCQ56918547
Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coliQ58827834
Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and FisQ73665057
FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coliQ73947854
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.Q39516058
Transcriptional regulation of fis operon involves a module of multiple coupled promoters.Q39646656
The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operonsQ39899278
Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers.Q39955231
Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic growth conditionsQ39968964
HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium.Q40402350
Non-invasive Salmonella typhimurium mutants are avirulent because of an inability to enter and destroy M cells of ileal Peyer's patchesQ40651358
Downregulation of the Escherichia coli guaB promoter by FIS.Q41068258
Control of rRNA synthesis in Escherichia coli at increased rrn gene dosage. Role of guanosine tetraphosphate and ribosome feedbackQ41139175
Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coliQ42113114
Silencing of toxic gene expression by Fis.Q42207366
Differential regulation of Escherichia coli topoisomerase I by Fis.Q42609303
hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genesQ42638991
AraC/XylS family members, HilC and HilD, directly bind and derepress the Salmonella typhimurium hilA promoterQ43970346
Positive and negative regulators for glucitol (gut) operon expression in Escherichia coliQ46099054
Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanismQ46192581
DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella entericaQ50043862
The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of SalmonellaQ50077977
Dual regulation by phospho-OmpR of ssrA/B gene expression in Salmonella pathogenicity island 2.Q50103896
AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in Salmonella typhimurium.Q50105717
Fis, a DNA nucleoid-associated protein, is involved in Salmonella typhimurium SPI-1 invasion gene expressionQ50117798
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing dataQ33704542
Catabolite repression of the propionate catabolic genes in Escherichia coli and Salmonella enterica: evidence for involvement of the cyclic AMP receptor proteinQ33726807
An incomplete TCA cycle increases survival of Salmonella Typhimurium during infection of resting and activated murine macrophagesQ33747798
Improving RNA-Seq expression estimates by correcting for fragment biasQ33848556
Salmonella pathogenicity islands: big virulence in small packages.Q33878633
SlyA regulates function of Salmonella pathogenicity island 2 (SPI-2) and expression of SPI-2-associated genesQ33883333
Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoterQ33885955
The SPI-3 pathogenicity island of Salmonella entericaQ33991194
Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and hilA.Q34001486
A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity islands SPI-1 and SPI-2Q34211607
A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradationQ34234308
The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coliQ34372976
Information analysis of Fis binding sitesQ34646135
MEME-ChIP: motif analysis of large DNA datasetsQ35019674
Identifying global regulators in transcriptional regulatory networks in bacteriaQ35565608
Sequence, regulation, and functions of fis in Salmonella typhimuriumQ35582859
The Fis protein: it's not just for DNA inversion anymoreQ35658496
Correlation between binding rate constants and individual information of E. coli Fis binding sitesQ36059538
Topological domain structure of the Escherichia coli chromosomeQ36661286
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tractsQ36700176
Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium.Q36701362
Structural and functional analysis of the C-terminal DNA binding domain of the Salmonella typhimurium SPI-2 response regulator SsrB.Q37169461
DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genesQ37389789
Bacterial nucleoid-associated proteins, nucleoid structure and gene expressionQ37688895
Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expressionQ37800563
The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.Q38290447
Genome organisation and chromatin structure in Escherichia coliQ38302764
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.Q38309827
Selective silencing of foreign DNA with low GC content by the H-NS protein in SalmonellaQ38312504
A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium.Q38338833
Modulation of CRP-dependent transcription at the Escherichia coli acsP2 promoter by nucleoprotein complexes: anti-activation by the nucleoid proteins FIS and IHF.Q38347298
A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gelsQ38352391
The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS.Q39332980
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectRNA sequencingQ2542347
P304page(s)e64688
P577publication date2013-05-23
P1433published inPLOS OneQ564954
P1476titleGenome-wide analysis of the salmonella Fis regulon and its regulatory mechanism on pathogenicity islands
P478volume8

Reverse relations

cites work (P2860)
Q37738653Bridging chromosomal architecture and pathophysiology of Streptococcus pneumoniae.
Q35951144DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Q40550823Dynamic Transcriptional Regulation of Fis in Salmonella During the Exponential Phase
Q91866642Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology
Q36149628Fis Is Essential for Yersinia pseudotuberculosis Virulence and Protects against Reactive Oxygen Species Produced by Phagocytic Cells during Infection
Q33575694Fis Regulates Type III Secretion System by Influencing the Transcription of exsA in Pseudomonas aeruginosa Strain PA14
Q49923816Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum
Q26781384Regulatory principles governing Salmonella and Yersinia virulence
Q40624537RpoS-dependent sRNA RgsA regulates Fis and AcpP in Pseudomonas aeruginosa.
Q35928651Systems Level Analyses Reveal Multiple Regulatory Activities of CodY Controlling Metabolism, Motility and Virulence in Listeria monocytogenes
Q92512976The Salmonella Specific, σE-Regulated, STM1250 and AgsA, Function With the sHsps IbpA and IbpB, to Counter Oxidative Stress and Survive Macrophage Killing
Q35085386The metabolic regulator CodY links Listeria monocytogenes metabolism to virulence by directly activating the virulence regulatory gene prfA.
Q43045071Two Fis regulators directly repress the expression of numerous effector-encoding genes in Legionella pneumophila
Q41982767Two-component regulators control hilA expression by controlling fimZ and hilE expression within Salmonella enterica serovar Typhimurium.

Search more.