Highly effective SNP-based association mapping and management of recessive defects in livestock

scientific article

Highly effective SNP-based association mapping and management of recessive defects in livestock is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/NG.96
P698PubMed publication ID18344998
P5875ResearchGate publication ID5507318

P50authorMerete FredholmQ28778502
Carole CharlierQ38305260
Claus B JørgensenQ40393033
Maria LongeriQ43144527
Robert J. HarveyQ49489445
Wouter CoppietersQ108394474
P2093author name stringMichel Georges
Sébastien Vandeputte
Daniel Desmecht
Haisheng Nie
Matthew Kent
Patricia Simon
Kirsten Harvey
Latifa Karim
Nadine Cambisano
Corinne Fasquelle
Marc Dive
Frédéric Rollin
Xavier Hubin
Brian R Pearce
Eloisa Carta
Sigbjorn Lien
Jorgen S Agerholm
Roger Hanset
Sabrina Dardano
Jean-Claude Frennet
Nico Tama
P2860cites workMutations in lipid transporter ABCA12 in harlequin ichthyosis and functional recovery by corrective gene transferQ24307584
Mutations in the gene-encoding SERCA1, the fast-twitch skeletal muscle sarcoplasmic reticulum Ca2+ ATPase, are associated with Brody diseaseQ24311805
Mutations in the transporter ABCA12 are associated with lamellar ichthyosis type 2Q24315044
Mutations in the gene encoding GlyT2 (SLC6A5) define a presynaptic component of human startle diseaseQ24338670
Mutations in ABCA12 underlie the severe congenital skin disease harlequin ichthyosis.Q24531488
Novel and recurring ABCA12 mutations associated with harlequin ichthyosis: implications for prenatal diagnosisQ28256460
ABCA12 is the major harlequin ichthyosis geneQ28257186
Homozygosity mapping: a way to map human recessive traits with the DNA of inbred childrenQ29615807
A nonsense mutation in the alpha1 subunit of the inhibitory glycine receptor associated with bovine myoclonus.Q31937610
Calcium ion in skeletal muscle: its crucial role for muscle function, plasticity, and diseaseQ33967669
A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformationQ34475345
Efficient mapping of mendelian traits in dogs through genome-wide associationQ34695793
Novel multilocus measure of linkage disequilibrium to estimate past effective population size.Q34994163
Structural basis of ion pumping by Ca2+-ATPase of the sarcoplasmic reticulumQ35799963
Pathomechanisms of harlequin ichthyosis and ABCA transporters in human diseasesQ36538928
Inherited disorders in Danish cattleQ36970690
Identification and prevalence of a genetic defect that causes leukocyte adhesion deficiency in Holstein cattleQ37228959
Deletion of the mouse glycine transporter 2 results in a hyperekplexia phenotype and postnatal lethalityQ44658571
Functional and structural roles of critical amino acids within the"N", "P", and "A" domains of the Ca2+ ATPase (SERCA) headpieceQ46517393
Characterization of the ABCA transporter subfamily: identification of prokaryotic and eukaryotic members, phylogeny and topologyQ49036360
Renal lipofuscinosis in Danish slaughter cattle.Q50542543
Estimates of inbreeding and relationship among registered Holstein females in the United States.Q50613900
Compound heterozygous ABCA12 mutations including a novel nonsense mutation underlie harlequin ichthyosis.Q54102875
Ichthyosis in Chianina cattleQ82973274
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)449-454
P577publication date2008-03-16
P1433published inNature GeneticsQ976454
P1476titleHighly effective SNP-based association mapping and management of recessive defects in livestock
P478volume40

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cites work (P2860)
Q27316460A CHRNB1 frameshift mutation is associated with familial arthrogryposis multiplex congenita in Red dairy cattle
Q27310057A MusD retrotransposon insertion in the mouse Slc6a5 gene causes alterations in neuromuscular junction maturation and behavioral phenotypes
Q39812527A catalogue of validated single nucleotide polymorphisms in bovine orthologs of mammalian imprinted genes and associations with beef production traits.
Q37287327A critical analysis of production-associated DNA polymorphisms in the genes of cattle, goat, sheep, and pig.
Q38646291A de novo missense mutation of FGFR2 causes facial dysplasia syndrome in Holstein cattle
Q37071895A defective SERCA1 protein is responsible for congenital pseudomyotonia in Chianina cattle
Q34404939A deletion in the bovine FANCI gene compromises fertility by causing fetal death and brachyspina
Q35938711A frameshift mutation in ARMC3 is associated with a tail stump sperm defect in Swedish Red (Bos taurus) cattle
Q54401240A genetic predisposition for bovine neonatal pancytopenia is not due to mutations in coagulation factor XI
Q33416022A genome wide survey of SNP variation reveals the genetic structure of sheep breeds
Q35040350A genome-wide association study points out the causal implication of SOX9 in the sex-reversal phenotype in XX pigs
Q33752642A hidden markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping
Q37438527A missense mutation accelerating the gating of the lysosomal Cl-/H+-exchanger ClC-7/Ostm1 causes osteopetrosis with gingival hamartomas in cattle
Q36129148A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle
Q38620804A model-based approach to characterize individual inbreeding at both global and local genomic scales
Q33984621A nonsense mutation in PLD4 is associated with a zinc deficiency-like syndrome in Fleckvieh cattle
Q36208976A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle
Q48245782A novel movement disorder in related male Labrador Retrievers characterized by extreme generalized muscular stiffness.
Q33958077A novel nonsense mutation in the DMP1 gene identified by a genome-wide association study is responsible for inherited rickets in Corriedale sheep
Q30527899A novel syndrome of lethal familial hyperekplexia associated with brain malformation
Q26779566A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds
Q64053385A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle
Q34205963A splice site variant in the bovine RNF11 gene compromises growth and regulation of the inflammatory response
Q40539166A stop-gain in the laminin, alpha 3 gene causes recessive junctional epidermolysis bullosa in Belgian Blue cattle
Q47099522Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattle
Q50248720Allelic heterogeneity of Crooked Tail Syndrome: result of balancing selection?
Q27346734An unusual splice defect in the mitofusin 2 gene (MFN2) is associated with degenerative axonopathy in Tyrolean Grey cattle
Q30494887Analysis of a zebrafish behavioral mutant reveals a dominant mutation in atp2a1/SERCA1.
Q47604685Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification
Q42607809Arachnomelia in Brown Swiss cattle maps to chromosome 5.
Q34196380Association mapping of quantitative disease resistance in a natural population of loblolly pine (Pinus taeda L.).
Q21092454Balancing selection of a frame-shift mutation in the MRC2 gene accounts for the outbreak of the Crooked Tail Syndrome in Belgian Blue Cattle
Q36333997Bovine and murine models highlight novel roles for SLC25A46 in mitochondrial dynamics and metabolism, with implications for human and animal health
Q34299350Bovine mastitis: frontiers in immunogenetics
Q27300807Bovine polledness--an autosomal dominant trait with allelic heterogeneity
Q37133967Bovine renal lipofuscinosis: prevalence, genetics and impact on milk production and weight at slaughter in Danish cattle
Q45779481Brachygnathia, cardiomegaly and renal hypoplasia syndrome (BCRHS) in Merino sheep maps to a 1.1-megabase region on ovine chromosome OAR2.
Q30648730C-Nap1 mutation affects centriole cohesion and is associated with a Seckel-like syndrome in cattle.
Q24312161CCDC39 is required for assembly of inner dynein arms and the dynein regulatory complex and for normal ciliary motility in humans and dogs
Q37605483Calcium pumps in health and disease
Q39140631Confirmation of a non-synonymous SNP in PNPLA8 as a candidate causal mutation for Weaver syndrome in Brown Swiss cattle
Q33788304Congenital bovine spinal dysmyelination is caused by a missense mutation in the SPAST gene
Q35154565DNA-based diagnosis of rare diseases in veterinary medicine: a 4.4 kb deletion of ITGB4 is associated with epidermolysis bullosa in Charolais cattle
Q30483303Defective glycinergic synaptic transmission in zebrafish motility mutants
Q47811357Detection of APAF1 mutation in Holstein cows and mummified foetuses in Japanese dairy herds.
Q30431871Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2
Q37679180Distinct phenotypes in zebrafish models of human startle disease
Q26776051Dystonia and Paroxysmal Dyskinesias: Under-Recognized Movement Disorders in Domestic Animals? A Comparison with Human Dystonia/Paroxysmal Dyskinesias
Q51439950E7 (1057ΔTA) mutation of the acidic α-glucosidase gene causes Pompe's disease in Droughtmaster cattle.
Q37858336Endoplasmic-reticulum calcium depletion and disease
Q84211489Frequency of bovine congenital pseudomyotonia carriers in selected Italian Chianina sires
Q42220347Functional study of a genetic marker allele associated with resistance to Ascaris suum in pigs
Q36119956Genetic variants in REC8, RNF212, and PRDM9 influence male recombination in cattle
Q34693086Genetic variation in vitamin B-12 content of bovine milk and its association with SNP along the bovine genome
Q28754424Genome wide signatures of positive selection: the comparison of independent samples and the identification of regions associated to traits
Q57278748Genome-Wide Association Studies and Linkage Disequilibrium in Cattle
Q39817338Genome-wide association and genomic selection in animal breeding
Q33876945Genome-wide association study identifies candidate genes for piglet splay leg syndrome in different populations
Q35503394Genome-wide next-generation DNA and RNA sequencing reveals a mutation that perturbs splicing of the phosphatidylinositol glycan anchor biosynthesis class H gene (PIGH) and causes arthrogryposis in Belgian Blue cattle
Q35646474Genomic analysis for managing small and endangered populations: a case study in Tyrol Grey cattle
Q35843960Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep
Q35638683Genomic signatures reveal new evidences for selection of important traits in domestic cattle.
Q28079279Genomics advances the study of inbreeding depression in the wild
Q33694319Genomics and the future of conservation genetics
Q58757682Genotyping of Multiple Clinical Samples with a Combined Direct PCR and Magnetic Lateral Flow Assay
Q34381226Glycine transporters as novel therapeutic targets in schizophrenia, alcohol dependence and pain
Q97884784Glycinergic transmission: glycine transporter GlyT2 in neuronal pathologies
Q90259593Harnessing genomic information for livestock improvement
Q35494442Homozygous haplotype deficiency reveals deleterious mutations compromising reproductive and rearing success in cattle
Q46324951Ichthyosis fetalis in Polled Hereford and Shorthorn calves
Q45178891Ichthyosis fetalis in a cross-bred lamb
Q35049421Identification of a 31-bp deletion in the RELN gene causing lissencephaly with cerebellar hypoplasia in sheep.
Q46023528Identification of a missense mutation in the bovine ATP2A1 gene in congenital pseudomyotonia of Chianina cattle: an animal model of human Brody disease.
Q34563545Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
Q39631555Identification of congenital muscular dystonia 2 associated with an inherited GlyT2 defect in Belgian Blue cattle from the United Kingdom.
Q34528049Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle
Q38224198Inbreeding depression in livestock species: review and meta-analysis
Q43041172Inhibition of ubiquitin proteasome system rescues the defective sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA1) protein causing Chianina cattle pseudomyotonia
Q90856968Invited review: Bioinformatic methods to discover the likely causal variant of a new autosomal recessive genetic condition using genome-wide data
Q27317357KDM2B is implicated in bovine lethal multi-organic developmental dysplasia
Q99237721Management of Genetic Diversity in the Era of Genomics
Q92424295Management of lethal recessive alleles in beef cattle through the use of mate selection software
Q33414004Mapping QTL influencing gastrointestinal nematode burden in Dutch Holstein-Friesian dairy cattle
Q34735308Mapping and exome sequencing identifies a mutation in the IARS gene as the cause of hereditary perinatal weak calf syndrome
Q34981451Mapping genes for complex traits in domestic animals and their use in breeding programmes
Q58136081Mapping of Calf Death in Japanese Black Cattle
Q34778026Microarray gene expression profiling of neural tissues in bovine spastic paresis
Q35065473Modeling of identity-by-descent processes along a chromosome between haplotypes and their genotyped ancestors
Q34478523Mutation discovery for Mendelian traits in non-laboratory animals: a review of achievements up to 2012.
Q30450702Mutations in the GlyT2 gene (SLC6A5) are a second major cause of startle disease
Q37780907Mutations in the bovine ABCG2 and the ovine MSTN gene added to the few quantitative trait nucleotides identified in farm animals: a mini-review
Q34204976New phenotypes for new breeding goals in dairy cattle
Q90352506Next-generation metrics for monitoring genetic erosion within populations of conservation concern
Q27310532Non-synonymous FGD3 Variant as Positional Candidate for Disproportional Tall Stature Accounting for a Carcass Weight QTL (CW-3) and Skeletal Dysplasia in Japanese Black Cattle
Q96348726Novel approach to incorporate information about recessive lethal genes increases the accuracy of genomic prediction for mortality traits
Q38024939Objectives and applications of phenotyping network set-up for livestock
Q28077463Overview on the Role of Advance Genomics in Conservation Biology of Endangered Species
Q21202809Pedigree analysis of Czech Holstein calves with schistosoma reflexum
Q33761204Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley
Q42183614Prediction of a deletion copy number variant by a dense SNP panel
Q36372841Prediction of complex traits: Conciliating genetics and statistics
Q50665698Prevalence of paunch calf syndrome carriers in Italian Romagnola cattle.
Q30532432Pseudomyotonia in Romagnola cattle caused by novel ATP2A1 mutations
Q28684802RNA-seq analysis of single bovine blastocysts
Q41126905Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species
Q58765793Recent advances in conservation and population genomics data analysis
Q64105589Removal of alleles by genome editing (RAGE) against deleterious load
Q37592774Research on inbreeding in the 'omic' era.
Q50248735SNP-based association mapping of the polled gene in divergent cattle breeds
Q39306306Saving the spandrels? Adaptive genomic variation in conservation and fisheries management
Q47151615Scientific Opinion on the welfare of cattle kept for beef production and the welfare in intensive calf farming systems
Q50254642Serial translocation by means of circular intermediates underlies colour sidedness in cattle
Q38928805Sex Reversal in Non-Human Placental Mammals
Q36126095Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology
Q30436113Startle disease in Irish wolfhounds associated with a microdeletion in the glycine transporter GlyT2 gene
Q38649234The Bos taurus-Bos indicus balance in fertility and milk related genes.
Q38270085The future of ancient DNA: Technical advances and conceptual shifts
Q38075148The stratum corneum: the rampart of the mammalian body
Q37875440Trypanosome genetics: populations, phenotypes and diversity
Q35687114Understanding the molecular mechanisms of human microtia via a pig model of HOXA1 syndrome
Q33909181Use of haplotypes to identify regions harbouring lethal recessive variants in pigs
Q27334820Using regulatory and epistatic networks to extend the findings of a genome scan: identifying the gene drivers of pigmentation in merino sheep
Q33564400Whole-genome SNP association in the horse: identification of a deletion in myosin Va responsible for Lavender Foal Syndrome
Q35562483Whole-genome sequencing identifies a homozygous deletion encompassing exons 17 to 23 of the integrin beta 4 gene in a Charolais calf with junctional epidermolysis bullosa

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