Cross-amplification and validation of SNPs conserved over 44 million years between seals and dogs

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Cross-amplification and validation of SNPs conserved over 44 million years between seals and dogs is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...868365H
P356DOI10.1371/JOURNAL.PONE.0068365
P932PMC publication ID3712990
P698PubMed publication ID23874599
P5875ResearchGate publication ID250925593

P50authorRob OgdenQ101463435
Michael ThorneQ43130112
P2093author name stringJaume Forcada
Joseph I Hoffman
Rob McEwing
P2860cites workConsistent divergence times and allele sharing measured from cross-species application of SNP chips developed for three domestic speciesQ59505908
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Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organismsQ83688238
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Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
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Scan of human genome reveals no new Loci under ancient balancing selectionQ24676642
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Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic materialQ28289686
The SWISS-PROT protein sequence data bankQ29026327
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Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation libraryQ30918358
Balancing selection and its effects on sequences in nearby genome regionsQ33242822
In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?Q33602996
The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta).Q33785939
A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida).Q33853248
Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptomeQ33863192
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systemsQ34070099
Identification of novel single nucleotide polymorphisms (SNPs) in deer (Odocoileus spp.) using the BovineSNP50 BeadChipQ34270815
Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammalQ34561292
Signature of balancing selection at the MC1R gene in Kunming dog populationsQ34592656
High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammalQ37073834
Gene mapping in the wild with SNPs: guidelines and future directions.Q37263982
Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencingQ37302820
Targets of balancing selection in the human genomeQ37434392
Sequencing breakthroughs for genomic ecology and evolutionary biologyQ37876496
Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA.Q39247103
Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.Q39597812
Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruceQ41818496
Tablet--next generation sequence assembly visualizationQ42144683
Male reproductive strategy and the importance of maternal status in the Antarctic fur seal Arctocephalus gazellaQ42609177
The conservation and evolutionary modularity of metabolismQ42641021
RADSeq: next-generation population geneticsQ42720622
Getting long in the tooth: a strong positive correlation between canine size and heterozygosity in Antarctic fur seals Arctocephalus gazella.Q45235752
Ancestral polymorphisms in Drosophila pseudoobscura and Drosophila mirandaQ45800277
Highly parallel SNP genotypingQ46226424
Female fur seals show active choice for males that are heterozygous and unrelated.Q51767429
Does kin selection influence fostering behaviour in Antarctic fur seals (Arctocephalus gazella)?Q55710282
Exploring the relationship between parental relatedness and male reproductive success in the Antarctic fur seal Arctocephalus gazellaQ56951594
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue7
P407language of work or nameEnglishQ1860
P304page(s)e68365
P577publication date2013-07-16
P1433published inPLOS OneQ564954
P1476titleCross-amplification and validation of SNPs conserved over 44 million years between seals and dogs
P478volume8

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cites work (P2860)
Q46657911A Study of Applicability of SNP Chips Developed for Bovine and Ovine Species to Whole-Genome Analysis of Reindeer Rangifer tarandus
Q40194745A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.
Q41432455A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species
Q35209702A single-nucleotide polymorphism-based approach for rapid and cost-effective genetic wolf monitoring in Europe based on noninvasively collected samples.
Q39747654Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs
Q56971170Avian genomics: fledging into the wild!
Q46610014Cross-Species Application of SNP Chips is Not Suitable for Identifying Runs of Homozygosity.
Q64092952Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
Q64098432Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse
Q57173967RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding
Q42742429Response to "Cross-Species Application of SNP Chips is Not Suitable for Identifying Runs of Homozygosity" by Shafer, Miller, and Kardos
Q28079381Strategies for determining kinship in wild populations using genetic data

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