Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.

scientific article published on 23 June 2012

Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1755-0998.2012.03158.X
P698PubMed publication ID22727236
P5875ResearchGate publication ID228061317

P50authorMelody S. ClarkQ42603141
Stephen J BridgettQ43275209
Jon SlateQ41085500
P2093author name stringJ Forcada
R Tucker
J I Hoffman
P2860cites workMale reproductive strategy and the importance of maternal status in the Antarctic fur seal Arctocephalus gazellaQ42609177
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Haplotype misclassification resulting from statistical reconstruction and genotype error, and its impact on association estimatesQ46046849
Highly parallel SNP genotypingQ46226424
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Exploring the mechanisms underlying a heterozygosity-fitness correlation for canine size in the Antarctic fur seal Arctocephalus gazellaQ47432755
Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genomeQ48311729
SNPs in ecological and conservation studies: a test in the Scandinavian wolf population.Q51192546
Rhh: an R extension for estimating multilocus heterozygosity and heterozygosity-heterozygosity correlation.Q51599057
C-values of seven marine mammal species determined by flow cytometry.Q51716060
Female fur seals show active choice for males that are heterozygous and unrelated.Q51767429
Does kin selection influence fostering behaviour in Antarctic fur seals (Arctocephalus gazella)?Q55710282
Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusionQ56951485
The impact of genotyping error on family-based analysis of quantitative traitsQ57234028
High-throughput SNP genotyping with the GoldenGate assay in maizeQ57245716
Does heterozygosity estimate inbreeding in real populations?Q57590061
SNPs in ecology, evolution and conservationQ58748361
Noninvasive genetic sampling: look before you leapQ58748500
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High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across speciesQ24597849
Statistical significance for genomewide studiesQ24681264
An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian populationQ25256424
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Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation libraryQ30918358
Detection of genotyping errors by Hardy-Weinberg equilibrium testing.Q33197920
Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmonQ33226418
Large-scale evaluation of candidate genes identifies associations between VEGF polymorphisms and bladder cancer riskQ33275297
Quality assessment parameters for EST-derived SNPs from catfishQ33372933
Quantitative analysis of single nucleotide polymorphisms within copy number variationQ33394240
In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?Q33602996
Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptomeQ33863192
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pineQ33964382
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How to track and assess genotyping errors in population genetics studies.Q34359400
Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varietiesQ35214712
Assessment of two flexible and compatible SNP genotyping platforms: TaqMan SNP Genotyping Assays and the SNPlex Genotyping SystemQ36097386
SNPs in forensic genetics: a review on SNP typing methodologiesQ36267311
Quality scores and SNP detection in sequencing-by-synthesis systemsQ36586616
Gene mapping in the wild with SNPs: guidelines and future directions.Q37263982
Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assayQ37274313
Detection and integration of genotyping errors in statistical geneticsQ37360857
Genotyping technologies for genetic researchQ37488213
Identification of single nucleotide polymorphisms in candidate genes for growth and reproduction in a nonmodel organism; the Atlantic cod, Gadus morhuaQ38411124
Toward genome-wide SNP genotypingQ40419131
Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruceQ41818496
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.Q42030448
Tablet--next generation sequence assembly visualizationQ42144683
P433issue5
P921main subjectmodel organismQ213907
single-nucleotide polymorphismQ501128
P304page(s)861-872
P577publication date2012-06-23
P1433published inMolecular Ecology ResourcesQ15760135
P1476titleRates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal
P478volume12

Reverse relations

cites work (P2860)
Q40194745A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.
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Q39314475Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana).
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