Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database

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Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PROT.23009
P932PMC publication ID3092812
P698PubMed publication ID21491493
P5875ResearchGate publication ID51049832

P50authorRuth NussinovQ7383152
Carlos CativielaQ92942052
M Isabel CalazaQ125351272
Francisco Rodríguez-RoperoQ43216269
David ZanuyQ43216280
Guillermo Revilla-LópezQ46182232
Carlos AlemánQ57482569
P2093author name stringAna I Jiménez
Juan Torras
David Curcó
P2860cites workDevelopment of the Colle-Salvetti correlation-energy formula into a functional of the electron densityQ21708802
Density-functional thermochemistry. III. The role of exact exchangeQ25938987
Structure of antibody-bound peptides and retro-inverso analogues. A transferred nuclear Overhauser effect spectroscopy and molecular dynamics approachQ27631636
Solution structure of a retro-inverso peptide analogue mimicking the foot-and-mouth disease virus major antigenic site. Structural basis for its antigenic cross-reactivity with the parent peptideQ27766742
Expanding the genetic code of Escherichia coliQ28213675
A nearly isosteric photosensitive amide-backbone substitution allows enzyme activity switching in ribonuclease s.Q30319859
Direct photomodulation of peptide backbone conformationsQ30320558
Reversal of peptide backbone direction may result in the mirroring of protein structureQ30334747
Preferred conformation of the terminally blocked (Aib)10 homo-oligopeptide: A long, regular 310-helixQ58441682
Selective Inhibition of Trypanosomal Triosephosphate Isomerase by a ThiopeptideQ58842968
In Vitro and In Vivo Enzymatic Formation of Supramolecular Hydrogels Based on Self-Assembled Nanofibers of a β-Amino Acid DerivativeQ59279635
Expanding the Genetic CodeQ60432486
Helical preferences of alanine, glycine, and aminoisobutyric homopeptidesQ62141728
Effects of thioamide substitution for the enkephalin conformation. Crystal structure of Boc-Tyr-Gly-Gly-Phe psi [CSNH]Leu-OBzlQ69427870
Partially Modified Retro-Inverso Peptides: Development, Synthesis, and Conformational BehaviorQ77646643
Collagen-related peptides: self-assembly of short, single strands into a functional biomaterial of micrometer scaleQ79705825
Methyl-blocked dimeric alpha,gamma-peptide nanotube segments: formation of a peptide heterodimer through backbone-backbone interactionsQ81004934
Use of a retroinverso p53 peptide as an inhibitor of MDM2Q81147870
Structural and functional studies on Ribonuclease S, retro S and retro-inverso S peptidesQ81506193
The ω, φ, and ψ Space of N-Hydroxy-N-methylacetamide and N-Acetyl-N '-hydroxy-N '-methylamide of Alanine and Their Boron IsosteresQ86839606
Genetic incorporation of a small, environmentally sensitive, fluorescent probe into proteins in Saccharomyces cerevisiae.Q30380051
Inverse sequence similarity in proteins and its relation to the three-dimensional fold.Q30428560
Synthesis of partially modified retro and retroinverso psi[NHCH(CF(3))]-peptides.Q30885137
Peptide-bond modification for metal coordination: peptides containing two hydroxamate groups.Q33193503
Solid-phase synthesis and characterization of N-methyl-rich peptides.Q33211754
Enzymatic aminoacylation of tRNA with unnatural amino acidsQ33236492
N-methylation of peptides: a new perspective in medicinal chemistryQ33352771
NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acidsQ33961066
Self-assembly and mineralization of peptide-amphiphile nanofibersQ34103088
Angiotensin-converting enzyme inhibitorsQ34236623
Incorporation of nonnatural amino acids into proteinsQ35799950
In vivo incorporation of unnatural amino acids to probe structure, dynamics, and ligand binding in a large protein by nuclear magnetic resonance spectroscopyQ36926246
Chemistry and biology of the aeruginosin family of serine protease inhibitorsQ37030738
Synthesis at the interface of chemistry and biologyQ37581575
Incorporation of unnatural amino acids for synthetic biologyQ37660070
Noncoded residues as building blocks in the design of specific secondary structures: symmetrically disubstituted glycines and beta-alanine.Q40830993
A thioamide substrate of carboxypeptidase A.Q42263847
Structure-activity relationship of indolicidin, a Trp-rich antibacterial peptideQ43145213
Solvent effects on the thioamide rotational barrier: an experimental and theoretical studyQ43677433
Peptoid residues and beta-turn formationQ44046870
Evaluating the potential of fluorinated tyrosines as spectroscopic probes of local protein environments: a UV resonance Raman studyQ44324256
A backbone-reversed form of an all-beta alpha-crystallin domain from a small heat-shock protein (retro-HSP12.6) folds and assembles into structured multimers.Q44418921
Highly stereoselective tandem aza-Michael addition-enolate protonation to form partially modified retropeptide mimetics incorporating a trifluoroalanine surrogateQ44441019
Protein segments with conformationally restricted amino acids can control supramolecular organization at the nanoscaleQ47589572
Chain conformation in polyretropeptides III: design of a 3(10) helix using alpha,alpha-dialkylated amino acids and retropeptide bonds.Q52251886
Effects of the phi[NHCO] retromodification on dehydroalanine dipeptide.Q52295147
ImprovedO/SExchange ReagentsQ56612778
N-Amination of Peptides: A Theoretical StudyQ58225165
On the Ability of Modified Peptide Links to Form Hydrogen BondsQ58225276
Retromodified Residues: Small Peptides and Polymers. Interactions, Force-Field Parametrization and Conformational AnalysesQ58225422
Conformations of Nylons 1,n According to the Number of Methylene CarbonsQ58225442
SCF-MO study of the preferred conformation of a symmetric malonamide derivative: N,N' -dimethyl malonamideQ58225488
A Helical, Aromatic, Peptide NanotubeQ58440737
Total Synthesis of Sequential Retro-Peptide OligomersQ58440858
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)1841-1852
P577publication date2011-04-12
P1433published inProteinsQ7251514
P1476titleIntegrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database
P478volume79

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cites work (P2860)
Q58224244Conformational Aspects and Molecular Dynamics Simulations of Peptide Hybrid Materials
Q53709822Conformational behaviour of peptides containing a 2-pyrrolidinemethanesulfonic acid (2PyMS) residue.
Q44699698Engineering strategy to improve peptide analogs: from structure-based computational design to tumor homing
Q42429983SwissSidechain: a molecular and structural database of non-natural sidechains

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