Characterizing the physical genome

scientific article

Characterizing the physical genome is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1038/NG1035
P698PubMed publication ID12454647
P5875ResearchGate publication ID11014615

P2093author name stringVishwanath R Iyer
Jonathan R Pollack
P2860cites workThe replication of DNA in Escherichia coliQ22066208
Tumour class prediction and discovery by microarray-based DNA methylation analysisQ24514903
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genomeQ24530466
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryoQ24530508
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridizationQ24657378
E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpointsQ24672780
Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysisQ24672892
Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysisQ24673086
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylasesQ27931861
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA associationQ27933908
The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stressQ27935491
Genome-wide location and function of DNA binding proteinsQ28131765
Genome-wide detection of allelic imbalance using human SNPs and high-density DNA arraysQ28144479
Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tailsQ28216534
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBFQ29547783
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarraysQ29615979
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeastQ29617217
Cancer epigenetics comes of ageQ29617275
Comparative genomics of BCG vaccines by whole-genome DNA microarrayQ29618558
Comprehensive human genome amplification using multiple displacement amplificationQ29618737
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumorsQ29618818
Genome-wide analysis of DNA copy-number changes using cDNA microarraysQ29618942
Serial regulation of transcriptional regulators in the yeast cell cycleQ29620484
Identification of amplified and expressed genes in breast cancer by comparative hybridization onto microarrays of randomly selected cDNA clonesQ30828856
DNA methylation and chromatin modification.Q33632335
Enrichment of regulatory signals in conserved non-coding genomic sequenceQ34098915
Assembly of microarrays for genome-wide measurement of DNA copy numberQ34099918
A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancerQ34126908
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumorsQ34190883
Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representationsQ35029018
Comparing genomes within the species Mycobacterium tuberculosisQ35033207
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarraysQ35206211
Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiaeQ35287931
Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.Q35777660
Single nucleotide polymorphism array analysis of flow-sorted epithelial cells from frozen versus fixed tissues for whole genome analysis of allelic loss in breast cancerQ35788700
Inhibition of DNA methyltransferase stimulates the expression of signal transducer and activator of transcription 1, 2, and 3 genes in colon tumor cellsQ36705872
Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.Q38293922
Chromatin profiling using targeted DNA adenine methyltransferaseQ38303417
Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylaseQ38304511
Detection of multiple gene amplifications in glioblastoma multiforme using array-based comparative genomic hybridizationQ40806426
Loss of genomic methylation causes p53-dependent apoptosis and epigenetic deregulationQ40834659
High-throughput analysis of subtelomeric chromosome rearrangements by use of array-based comparative genomic hybridizationQ41048598
Genome-wide binding map of the histone deacetylase Rpd3 in yeastQ45278552
Dissecting the architecture of a quantitative trait locus in yeastQ46110868
Genome scanning with array CGH delineates regional alterations in mouse islet carcinomasQ46369286
Klinefelter's syndrome as a model of anomalous cerebral laterality: testing gene dosage in the X chromosome pseudoautosomal region using a DNA microarray.Q50854208
Replication dynamics of the yeast genome.Q52053905
Examination of oncogene amplification by genomic DNA microarray in hepatocellular carcinomas: comparison with comparative genomic hybridization analysis.Q53394866
High resolution deletion analysis of constitutional DNA from neurofibromatosis type 2 (NF2) patients using microarray-CGHQ57266823
Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arraysQ74268267
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3Q77486342
Combined comparative genomic hybridization and genomic microarray for detection of gene amplifications in pulmonary artery intimal sarcomas and adrenocortical tumorsQ77841211
Genome-wide detection of chromosomal imbalances in tumors using BAC microarraysQ77847904
Methylation profiling of CpG islands in human breast cancer cellsQ78015848
P407language of work or nameEnglishQ1860
P304page(s)515-521
P577publication date2002-12-01
P1433published inNature GeneticsQ976454
P1476titleCharacterizing the physical genome
P478volume32 Suppl

Reverse relations

cites work (P2860)
Q25255801Affinity selection of DNA-binding protein complexes using mRNA display
Q94102853Current Awareness on Comparative and Functional Genomics
Q36139517Cytogenetic and molecular genetic alterations in hepatocellular carcinoma.
Q33904927Definition of a critical region on chromosome 18 for congenital aural atresia by arrayCGH
Q36537299Development of a DNA-labeling system for array-based comparative genomic hybridization
Q31069188Discovery of principles of nature from mathematical modeling of DNA microarray data
Q57837779Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization
Q42278134Genome-wide analysis of chromatin status using tiling microarrays
Q35445393Genomic imbalances in mental retardation
Q37493618Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles
Q24796224Identification of amplified and highly expressed genes in amplicons of the T-cell line huT78 detected by cDNA microarray CGH
Q28241066Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
Q35917589Molecular medicine: a clinician's primer on microarrays.
Q40276097Molecular profiling reveals myeloid leukemia cell lines to be faithful model systems characterized by distinct genomic aberrations
Q28757797Navigating public microarray databases
Q36909339Novel and future applications of microarrays in toxicological research
Q24817145PCR amplification from single DNA molecules on magnetic beads in emulsion: application for high-throughput screening of transcription factor targets
Q36322921Protein microarrays for the diagnosis of allergic diseases: state-of-the-art and future development
Q37232622Rethinking periodontal inflammation
Q34552527Singular value decomposition of genome-scale mRNA lengths distribution reveals asymmetry in RNA gel electrophoresis band broadening
Q24798068The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
Q28593119The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
Q34060416The role of rare structural variants in the genetics of autism spectrum disorders
Q36700907The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome.
Q26862955Uncovering transcription factor modules using one- and three-dimensional analyses
Q73905067Yeast expression-array analysis goes molecular

Search more.