Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors

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Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors is …
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scholarly articleQ13442814

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P819ADS bibcode2002PNAS...9912963P
P356DOI10.1073/PNAS.162471999
P932PMC publication ID130569
P698PubMed publication ID12297621
P5875ResearchGate publication ID11125153

P50authorPatrick O. BrownQ546092
David BotsteinQ1173787
Robert TibshiraniQ3938444
Anne-Lise Børresen-DaleQ11958220
Per Eystein LønningQ11995192
Stefanie S JeffreyQ64681693
Jonathan R. PollackQ73921770
Christian A. ReesQ74026886
Charles M. PerouQ30503513
Therese SørlieQ60034610
P2860cites workMolecular cytogenetics of primary breast cancer by CGHQ74382796
Silence of chromosomal amplifications in colon cancerQ77678758
Initial sequencing and analysis of the human genomeQ21045365
How aneuploidy affects metabolic control and causes cancerQ24531520
Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridizationQ24564349
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implicationsQ27860709
Molecular portraits of human breast tumoursQ28032461
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarraysQ29615979
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumorsQ29618818
Genome-wide analysis of DNA copy-number changes using cDNA microarraysQ29618942
Matrix-based comparative genomic hybridization: Biochips to screen for genomic imbalancesQ32168348
Comparative genomic hybridization analysis of 38 breast cancer cell lines: a basis for interpreting complementary DNA microarray data.Q33180996
Pieces of the puzzle: expressed sequence tags and the catalog of human genesQ33368363
Aneuploidy correlated 100% with chemical transformation of Chinese hamster cellsQ36822801
The consequences of chromosomal aneuploidy on gene expression profiles in a cell line model for prostate carcinogenesisQ40766945
Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogeneQ41738933
Molecular cytogenetic analysis of consistent abnormalities at 8q12-q22 in breast cancer.Q46171268
Widespread aneuploidy revealed by DNA microarray expression profilingQ52923550
P433issue20
P407language of work or nameEnglishQ1860
P304page(s)12963-12968
P577publication date2002-09-24
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleMicroarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
P478volume99

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Q33907993Identification of drivers from cancer genome diversity in hepatocellular carcinoma
Q58739892Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis
Q54504858Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics.
Q39901210Identification of genes that exhibit changes in expression on the 8p chromosomal arm by the Systematic Multiplex RT-PCR (SM RT-PCR) and DNA microarray hybridization methods.
Q38305699Identification of genes with correlated patterns of variations in DNA copy number and gene expression level in gastric cancer.
Q37214325Identification of key clinical phenotypes of breast cancer using a reduced panel of protein biomarkers
Q37413653Identification of metastasis-associated genes in colorectal cancer through an integrated genomic and transcriptomic analysis
Q42478400Identification of molecular apocrine breast tumours by microarray analysis.
Q21245740Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling
Q37360110Identification of potential driver genes in human liver carcinoma by genomewide screening
Q28288078Identification of putative oncogenes in lung adenocarcinoma by a comprehensive functional genomic approach
Q35256884Identification of regulatory SNPs associated with genetic modifications in lung adenocarcinoma.
Q38518433Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses
Q34787147Identification of the NEDD4L Gene as a Prognostic Marker by Integrated Microarray Analysis of Copy Number and Gene Expression Profiling in Non-small Cell Lung Cancer
Q30587051Identifying in-trans process associated genes in breast cancer by integrated analysis of copy number and expression data
Q33771056Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer
Q37303817Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis
Q34542457Increased WSB1 copy number correlates with its over-expression which associates with increased survival in neuroblastoma
Q37428060Individual karyotypes at the origins of cervical carcinomas
Q45794856IndividualizedPath: identifying genetic alterations contributing to the dysfunctional pathways in glioblastoma individuals
Q35986538Inference of tumor phylogenies from genomic assays on heterogeneous samples
Q33977659Inferring causal genomic alterations in breast cancer using gene expression data
Q40903957Inferring combinatorial association logic networks in multimodal genome-wide screens.
Q41134618Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins
Q28080281Insights for hepatitis C virus related hepatocellular carcinoma genetic biomarkers: Early diagnosis and therapeutic intervention
Q28397049Integrated DNA Copy Number and Gene Expression Regulatory Network Analysis of Non-small Cell Lung Cancer Metastasis
Q34026325Integrated analyses of copy number variations and gene expression in lung adenocarcinoma
Q28730850Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma
Q30490621Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Q48252205Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities
Q33881798Integrated analysis of gene expression and copy number data on gene shaving using independent component analysis
Q57270554Integrated genomic profiling identifies two distinct molecular subtypes with divergent outcome in neuroblastoma with loss of chromosome 11q
Q33968921Integrated genomics of ovarian xenograft tumor progression and chemotherapy response
Q80402791Integrated global profiling of cancer
Q60910638Integrated landscape of copy number variation and RNA expression associated with nodal metastasis in invasive ductal breast carcinoma
Q41890841Integrated study of copy number states and genotype calls using high-density SNP arrays
Q37968654Integrating breast cancer genetics into clinical practice.
Q31038779Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel
Q26782613Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential
Q46190356Integrating genomics and proteomics-oriented biomarkers to comprehend lung cancer
Q36152246Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer
Q28271520Integration of gene dosage and gene expression in non-small cell lung cancer, identification of HSP90 as potential target
Q33670486Integration of mRNA expression profile, copy number alterations, and microRNA expression levels in breast cancer to improve grade definition
Q30495169Integrative analysis of DNA copy number and gene expression in metastatic oral squamous cell carcinoma identifies genes associated with poor survival
Q38516793Integrative analysis of a cancer somatic mutome
Q33557657Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
Q37010330Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
Q28396741Integrative and comparative genomics analysis of early hepatocellular carcinoma differentiated from liver regeneration in young and old
Q33503982Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis
Q34029818Integrative epigenomic and genomic analysis of malignant pheochromocytoma
Q36487126Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer
Q40007526Integrative radiogenomic analysis for multicentric radiophenotype in glioblastoma
Q31059566Integrative subtype discovery in glioblastoma using iCluster
Q35888918Inter-chromosomal variation in the pattern of human population genetic structure
Q39239067Isolation and Characterization of Cancer Stem Cells In Vitro
Q33557528JISTIC: identification of significant targets in cancer.
Q30885702Karyotypic evolutions of cancer species in rats during the long latent periods after injection of nitrosourea
Q39633864LY6K is a novel molecular target in bladder cancer on basis of integrate genome-wide profiling
Q30489312Laminin-binding integrin gene copy number alterations in distinct epithelial-type cancers
Q37939073Lessons from a decade of integrating cancer copy number alterations with gene expression profiles
Q21092827Lineage-specific gene duplication and loss in human and great ape evolution
Q33910433Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer
Q33988589Lobular and ductal carcinomas of the breast have distinct genomic and expression profiles
Q34267035Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes
Q35731663Loss of heterozygosity: what is it good for?
Q24800138M-CGH: analysing microarray-based CGH experiments
Q33694015MAL2 and tumor protein D52 (TPD52) are frequently overexpressed in ovarian carcinoma, but differentially associated with histological subtype and patient outcome
Q24651422MTDH activation by 8q22 genomic gain promotes chemoresistance and metastasis of poor-prognosis breast cancer
Q57690359MYC-containing double minutes in hematologic malignancies: evidence in favor of the episome model and exclusion of MYC as the target gene
Q33449289Magellan: a web based system for the integrated analysis of heterogeneous biological data and annotations; application to DNA copy number and expression data in ovarian cancer
Q34417159Manipulating protein acetylation in breast cancer: a promising approach in combination with hormonal therapies?
Q34257684Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses.
Q60203690Mesenchymal stem cells from multiple myeloma patients display distinct genomic profile as compared with those from normal donors
Q34591242Metabolomics: building on a century of biochemistry to guide human health
Q40640337Metastatic lymph node 64 (MLN64), a gene overexpressed in breast cancers, is regulated by Sp/KLF transcription factors
Q40575587Method for manufacturing whole-genome microarrays by rolling circle amplification
Q42801596Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications
Q48102903Microarray analysis of gliomas reveals chromosomal position-associated gene expression patterns and identifies potential immunotherapy targets.
Q39536347Microarray and its applications
Q21266591Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures
Q36177378Microarrays in veterinary diagnostics
Q42919521Microwave-Mediated Synthesis of Labeled Nucleotides with Utility in the Synthesis of DNA Probes
Q30838107Mining TCGA data using Boolean implications
Q35108751Molecular Characterization of Breast Cancer Aggressiveness
Q36579305Molecular analysis reveals heterogeneity of mouse mammary tumors conditionally mutant for Brca1.
Q83513596Molecular biomarkers involved in the tumor dedifferentiation process of thyroid carcinoma of epithelial origin: perspectives
Q34807023Molecular classification of familial non-BRCA1/BRCA2 breast cancer
Q51939495Molecular karyotyping of human hepatocellular carcinoma using single-nucleotide polymorphism arrays
Q37542255Molecular markers of breast axillary lymph node metastasis
Q38150909Molecular pathological analysis of sarcomas using paraffin-embedded tissue: current limitations and future possibilities
Q33479152Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery
Q35084886Molecular profiling of giant cell tumor of bone and the osteoclastic localization of ligand for receptor activator of nuclear factor kappaB
Q37598935Molecular profiling of laryngeal cancer
Q24634248Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers
Q41949567Mouse N-acetyltransferase type 2, the homologue of human N-acetyltransferase type 1.
Q33403662Mucin 1 (MUC1) is a novel partner for MAL2 in breast carcinoma cells
Q89792595Multi-omics Data Integration, Interpretation, and Its Application
Q92538631Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly
Q30631788Multisample aCGH data analysis via total variation and spectral regularization.
Q31028324Multivariate Boosting for Integrative Analysis of High-Dimensional Cancer Genomic Data
Q34347579Mutation of GATA3 in human breast tumors
Q35920494Myc proteins in brain tumor development and maintenance
Q39551687Network modeling of the transcriptional effects of copy number aberrations in glioblastoma
Q37574324New insights into the troubles of aneuploidy
Q49478791Nonlinear Joint Latent Variable Models and Integrative Tumor Subtype Discovery
Q43480931Nonparametric testing for DNA copy number induced differential mRNA gene expression
Q35173695Novel patterns of genome rearrangement and their association with survival in breast cancer
Q47399899Novel regions of amplification on 8q distinct from the MYC locus and frequently altered in oral dysplasia and cancer
Q45196334Novel regions of chromosomal amplification at 6p21, 5p13, and 12q14 in gastric cancer identified by array comparative genomic hybridization
Q37217158Nuclear receptor coregulators as a new paradigm for therapeutic targeting
Q24678477Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer
Q42513050Oncosis and apoptosis induction by activation of an overexpressed ion channel in breast cancer cells
Q35886756Overexpressed oncogenic tumor-self antigens
Q37447976Overexpression of YWHAZ as an independent prognostic factor in adenocarcinoma of the esophago-gastric junction
Q28285857Overexpression of YWHAZ relates to tumor cell proliferation and malignant outcome of gastric carcinoma
Q36571451Overexpression of the S100A2 protein as a prognostic marker for patients with stage II and III colorectal cancer.
Q36206503PAR6B is required for tight junction formation and activated PKCζ localization in breast cancer
Q45271498PRR5 encodes a conserved proline-rich protein predominant in kidney: analysis of genomic organization, expression, and mutation status in breast and colorectal carcinomas
Q30471421Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana
Q26786127Patterns of Chromosomal Aberrations in Solid Tumors
Q35864949Penalized weighted low-rank approximation for robust recovery of recurrent copy number variations
Q46796492Piecewise-constant and low-rank approximation for identification of recurrent copy number variations.
Q30476046Pooled analysis of loss of heterozygosity in breast cancer: a genome scan provides comparative evidence for multiple tumor suppressors and identifies novel candidate regions
Q38514215Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions
Q37327531Precise inference of copy number alterations in tumor samples from SNP arrays
Q38438763Preclinical efficacy of immune-checkpoint monotherapy does not recapitulate corresponding biomarkers-based clinical predictions in glioblastoma.
Q31067056Prediction of chromosomal aneuploidy from gene expression data.
Q28742950Predictive genes in adjacent normal tissue are preferentially altered by sCNV during tumorigenesis in liver cancer and may rate limiting
Q35945546Preservation of skin DNA for oligonucleotide array CGH studies: a feasibility study
Q29616779Principles of cancer therapy: oncogene and non-oncogene addiction
Q35089389Profiling cancer
Q35780955Programmed Genome Rearrangements in the Ciliate Oxytricha
Q33686899Proteomic changes resulting from gene copy number variations in cancer cells
Q28252569RCP is a human breast cancer-promoting gene with Ras-activating function
Q41857308RETRACTED: Ranking candidate genes of esophageal squamous cell carcinomas based on differentially expressed genes and the topological properties of the co-expression network
Q40278421RNA interference-based functional dissection of the 17q12 amplicon in breast cancer reveals contribution of coamplified genes
Q34284546RNA-Seq and human complex diseases: recent accomplishments and future perspectives.
Q34438332RNA-mediated epigenetic regulation of DNA copy number
Q33951424Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data
Q35956872Rare structural variants in schizophrenia: one disorder, multiple mutations; one mutation, multiple disorders
Q36313208Recent advances in array comparative genomic hybridization technologies and their applications in human genetics
Q52653017Recurrent copy number alterations in young women with breast cancer.
Q36341467Recurrent transcriptional clusters in the genome of mouse pluripotent stem cells
Q33911611Reduced rank regression via adaptive nuclear norm penalization
Q37270376Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysis
Q40209266Regional copy number-independent deregulation of transcription in cancer
Q43512760Regression models, scan statistics and reappearance probabilities to detect regions of association between gene expression and copy number
Q37528144Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer
Q64969914Results of next-generation sequencing gene panel diagnostics including copy-number variation analysis in 810 patients suspected of heritable thoracic aortic disorders.
Q37419573Rhomboid domain containing 2 (RHBDD2): a novel cancer-related gene over-expressed in breast cancer
Q37375397Road to the crossroads of life and death: linking sister chromatid cohesion and separation to aneuploidy, apoptosis and cancer
Q36419981SAGE and related approaches for cancer target identification
Q34009701SMURF1 amplification promotes invasiveness in pancreatic cancer
Q28710136SNP microarray analyses reveal copy number alterations and progressive genome reorganization during tumor development in SVT/t driven mice breast cancer
Q37714736SNP rs10248565 in HDAC9 as a novel genomic aberration biomarker of lung adenocarcinoma in non-smoking women
Q30768936SPARSE INTEGRATIVE CLUSTERING OF MULTIPLE OMICS DATA SETS.
Q40275982Scanning copy number and gene expression on the 16p13.3-13.2 chromosomal region by the systematic multiplex polymerase chain reaction and reverse transcription-polymerase chain reaction methods
Q33367138Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms
Q33736439Segmentation of genomic and transcriptomic microarrays data reveals major correlation between DNA copy number aberrations and gene-loci expression
Q53209834Segmented regression, a versatile tool to analyze mRNA levels in relation to DNA copy number aberrations
Q28741460Selective Genomic Copy Number Imbalances and Probability of Recurrence in Early-Stage Breast Cancer
Q42566509Sensitive and accurate detection of copy number variants using read depth of coverage
Q41600805Signatures derived from increase in SHARPIN gene copy number are associated with poor prognosis in patients with breast cancer
Q39932632Significance of estrogen receptor 1 (ESR-1) gene imbalances in colon and hepatocellular carcinomas based on tissue microarrays analysis
Q34395225Silencing HoxA1 by intraductal injection of siRNA lipidoid nanoparticles prevents mammary tumor progression in mice
Q34459632Simple binary segmentation frameworks for identifying variation in DNA copy number
Q42228486Simple derivation of transgene-free iPS cells by a dual recombinase approach
Q44771916Simultaneous chromosome 1q gain and 16q loss is associated with steroid receptor presence and low proliferation in breast carcinoma
Q92447495Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells
Q36954927Small-scale copy number variation and large-scale changes in gene expression.
Q34173332Soluble L1CAM promotes breast cancer cell adhesion and migration in vitro, but not invasion
Q24648102Somatic mutations affect key pathways in lung adenocarcinoma
Q33367131Somatic pairing of chromosome 19 in renal oncocytoma is associated with deregulated EGLN2-mediated [corrected] oxygen-sensing response
Q35749438Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas
Q39175219Sparse multivariate factor analysis regression models and its applications to integrative genomics analysis
Q31041638Spatial normalization of array-CGH data
Q36629194Specific secondary genetic alterations in mantle cell lymphoma provide prognostic information independent of the gene expression-based proliferation signature
Q33776517Statistical analysis of the cancer cell's molecular entropy using high-throughput data
Q34339885Statistical measures of transcriptional diversity capture genomic heterogeneity of cancer
Q33541370Statistics and bioinformatics in nutritional sciences: analysis of complex data in the era of systems biology
Q33688989Systematic analysis of gene expression alterations and clinical outcomes of adenylate cyclase-associated protein in cancer
Q57032028Systematic expression alteration analysis of master reprogramming factor OCT4 and its three pseudogenes in human cancer and their prognostic outcomes
Q59789265Systematic identification of mutations and copy number alterations associated with cancer patient prognosis
Q39019239THE SCREENING AND RANKING ALGORITHM FOR CHANGE-POINTS DETECTION IN MULTIPLE SAMPLES.
Q35078761TP53 and breast cancer
Q39153926TPD52 represents a survival factor in ERBB2-amplified breast cancer cells.
Q56966016TRAF4 overexpression is a common characteristic of human carcinomas
Q37132817TRAF4, at the Crossroad between Morphogenesis and Cancer
Q33847811Tamoxifen resistance in early breast cancer: statistical modelling of tissue markers to improve risk prediction
Q37204063Targeting EZH2 for cancer therapy: progress and perspective.
Q38306484Targets of genome copy number reduction in primary breast cancers identified by integrative genomics
Q36303996Technology insight: Application of molecular techniques to formalin-fixed paraffin-embedded tissues from breast cancer
Q53542222The BAC resource: tools for array CGH and FISH.
Q34071198The W, X, Y and Z of sex-chromosome dosage compensation.
Q26995532The consequences of chromosomal aneuploidy on the transcriptome of cancer cells
Q24803014The diagnosis and management of pre-invasive breast disease: promise of new technologies in understanding pre-invasive breast lesions
Q89144664The dynamic and stress-adaptive signaling hub of 14-3-3: emerging mechanisms of regulation and context-dependent protein-protein interactions
Q36043417The evolution of gene expression and the transcriptome-phenotype relationship.
Q33745941The four-transmembrane protein MAL2 and tumor protein D52 (TPD52) are highly expressed in colorectal cancer and correlated with poor prognosis
Q34416425The human cancer genome project--one more misstep in the war on cancer
Q40258450The impact of genomic alterations on the transcriptome: a prostate cancer cell line case study
Q36445020The progress on genetic analysis of nasopharyngeal carcinoma
Q42481244The role of S100 genes in breast cancer progression
Q37687220The role of histone modifications and variants in regulating gene expression in breast cancer.
Q36344271The role of microarray technologies in the study of soft tissue tumours
Q51840461The sigmoidal curve of cancer
Q34248355The stable traits of melanoma genetics: an alternate approach to target discovery
Q21128645The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
Q55660623Tissue Specificity and Dynamics of Sex-Biased Gene Expression in a Common Frog Population with Differentiated, Yet Homomorphic, Sex Chromosomes.
Q36573836Tissue detection of biomolecular predictors in breast cancer
Q33289823Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation
Q36439819Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome
Q43137043Tumor genome wide DNA alterations assessed by array CGH in patients with poor and excellent survival following operation for colorectal cancer.
Q51022990Tumor protein D52 (isoform 3) contributes to prostate cancer cell growth via targeting nuclear factor-κB transactivation in LNCaP cells.
Q40540347Unstable genomes elevate transcriptome dynamics
Q30808425Using XHMM Software to Detect Copy Number Variation in Whole-Exome Sequencing Data
Q48698068Using array-comparative genomic hybridization to define molecular portraits of primary breast cancers.
Q30656126Using large-scale molecular data sets to improve breast cancer treatment
Q35873673Using microarrays to predict resistance to chemotherapy in cancer patients
Q33870491Virtual CGH: an integrative approach to predict genetic abnormalities from gene expression microarray data applied in lymphoma
Q24815370Visualization-based discovery and analysis of genomic aberrations in microarray data
Q35683652When One and One Gives More than Two: Challenges and Opportunities of Integrative Omics
Q34373539Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH.
Q42171696Widespread duplications in the genomes of laboratory stocks of Dictyostelium discoideum
Q54518412[Different coexisting genotypes in the breast cancer cell line MDA-MB-468].
Q36543286bc-GenExMiner 3.0: new mining module computes breast cancer gene expression correlation analyses
Q53340770c-Jun N-terminal kinase is activated in non-small-cell lung cancer and promotes neoplastic transformation in human bronchial epithelial cells
Q24796016cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma
Q36249808iGC-an integrated analysis package of gene expression and copy number alteration.
Q36393797integIRTy: a method to identify genes altered in cancer by accounting for multiple mechanisms of regulation using item response theory
Q36902949miRNA expression profiling of 51 human breast cancer cell lines reveals subtype and driver mutation-specific miRNAs
Q50909522tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation

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