Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data

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Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKM1143
P932PMC publication ID2241875
P698PubMed publication ID18187509
P5875ResearchGate publication ID5662290

P50authorHenne HolstegeQ61281193
Jos JonkersQ88723772
Lodewyk F A WesselsQ89966632
Christiaan KlijnQ41050637
P2093author name stringXiaoling Liu
Jeroen de Ridder
Marcel Reinders
P2860cites workThe Hallmarks of CancerQ221226
Cancer as an evolutionary and ecological processQ22122026
Characterization of FBX25, encoding a novel brain-expressed F-box proteinQ24294306
Alterations of anaphase-promoting complex genes in human colon cancer cellsQ24297514
The zinc finger of the CSN-associated deubiquitinating enzyme USP15 is essential to rescue the E3 ligase Rbx1Q24307443
NARF, an nemo-like kinase (NLK)-associated ring finger protein regulates the ubiquitylation and degradation of T cell factor/lymphoid enhancer factor (TCF/LEF)Q24337553
The BRCA2-interacting protein BCCIP functions in RAD51 and BRCA2 focus formation and homologous recombinational repairQ24556631
Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridizationQ24564349
Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approachQ24633776
A census of human cancer genesQ24647081
High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridizationQ25257525
Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screensQ27339599
CGHcall: calling aberrations for array CGH tumor profiles.Q51924133
Adenovirus E1a prevents the retinoblastoma gene product from complexing with a cellular transcription factorQ52480364
Synergistic tumor suppressor activity of BRCA2 and p53 in a conditional mouse model for breast cancer.Q52544495
High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.Q53370271
Amplification of endogenous myc-related DNA sequences in a human myeloid leukaemia cell lineQ53564566
CGH-targeted linkage analysis reveals a possible BRCA1 modifier locus on chromosome 5qQ57903122
Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arraysQ74268267
Molecular classification of breast carcinomas by comparative genomic hybridization: a specific somatic genetic profile for BRCA1 tumorsQ78598262
???Q59148640
DAVID: Database for Annotation, Visualization, and Integrated DiscoveryQ27499374
Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogeneQ27860693
Molecular portraits of human breast tumoursQ28032461
Repeated observation of breast tumor subtypes in independent gene expression data setsQ28131820
Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variationQ28207115
TFDP1, CUL4A, and CDC16 identified as targets for amplification at 13q34 in hepatocellular carcinomasQ28218999
Cross-species oncogenomics in cancer gene identificationQ28249773
WD repeat-containing mitotic checkpoint proteins act as transcriptional repressors during interphaseQ28283832
Cul4A targets p27 for degradation and regulates proliferation, cell cycle exit, and differentiation during erythropoiesisQ28593723
On Estimation of a Probability Density Function and ModeQ29030604
Circular binary segmentation for the analysis of array-based DNA copy number dataQ29615406
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarraysQ29615979
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumorsQ29618818
Genome-wide analysis of DNA copy-number changes using cDNA microarraysQ29618942
Genomic and transcriptional aberrations linked to breast cancer pathophysiologiesQ29619120
A comparison study: applying segmentation to array CGH data for downstream analysesQ30797973
STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experimentsQ30821792
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH dataQ30998407
Computation of recurrent minimal genomic alterations from array-CGH dataQ31030483
Robust smooth segmentation approach for array CGH data analysisQ31120038
A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridizationQ33196501
High resolution array-CGH analysis of single cellsQ33267061
The emerging role of the COP9 signalosome in cancerQ34147948
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumorsQ34190883
DDEF1 is located in an amplified region of chromosome 8q and is overexpressed in uveal melanomaQ34419301
Array-CGH and breast cancerQ35012854
Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patientsQ35605761
Haploinsufficiency for tumour suppressor genes: when you don't need to go all the way.Q35789595
Array comparative genomic hybridization and its applications in cancerQ36141621
Manifestation, mechanisms and mysteries of gene amplificationsQ36313394
Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypesQ38444987
High-resolution global profiling of genomic alterations with long oligonucleotide microarrayQ40534935
Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogeneQ41738933
Immunohistochemical and clinical characterization of the basal-like subtype of invasive breast carcinomaQ42466578
Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancerQ42499457
Onc gene amplification in promyelocytic leukaemia cell line HL-60 and primary leukaemic cells of the same patientQ43789288
PIK3CA is implicated as an oncogene in ovarian cancer.Q46015944
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectstatisticsQ12483
P304page(s)e13
P577publication date2008-01-10
P1433published inNucleic Acids ResearchQ135122
P1476titleIdentification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data
P478volume36

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cites work (P2860)
Q44054130A Bayesian segmentation approach to ascertain copy number variations at the population level
Q38471824A bayesian integrative model for genetical genomics with spatially informed variable selection.
Q44762537A diagnostic algorithm to identify paired tumors with clonal origin
Q40366176A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control
Q44943632Atypical neurofibromas in neurofibromatosis type 1 are premalignant tumors
Q30497664BRCA1-mutated and basal-like breast cancers have similar aCGH profiles and a high incidence of protein truncating TP53 mutations
Q37137914BRCA1185delAG tumors may acquire therapy resistance through expression of RING-less BRCA1
Q34962407Cancer gene discovery in mouse and man.
Q34534035Comparative analysis of methods for identifying recurrent copy number alterations in cancer
Q61124716Comparative oncogenomics identifies combinations of driver genes and drug targets in BRCA1-mutated breast cancer
Q36268076Comparative oncogenomics implicates the neurofibromin 1 gene (NF1) as a breast cancer driver.
Q30536665Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
Q33671467Cross-species comparison of aCGH data from mouse and human BRCA1- and BRCA2-mutated breast cancers
Q38068938Detection and interpretation of genomic structural variation in health and disease.
Q37384126Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously
Q30498218DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors
Q28483012Fenton reaction induced cancer in wild type rats recapitulates genomic alterations observed in human cancer
Q33481331Finding exclusively deleted or amplified genomic areas in lung adenocarcinomas using a novel chromosomal pattern analysis
Q39543236FocalScan: Scanning for altered genes in cancer based on coordinated DNA and RNA change
Q38484434Functional analysis of human cancer-associated genes and their association with the testes and epididymis
Q34354428Genome-wide identification of significant aberrations in cancer genome.
Q37200784Identification of Copy Number Aberrations in Breast Cancer Subtypes Using Persistence Topology
Q36011694Identification of cancer-driver genes in focal genomic alterations from whole genome sequencing data
Q34203669Identification of differential aberrations in multiple-sample array CGH studies
Q33495849Identification of significant regional genetic variations using continuous CNV values in aCGH data.
Q51802432Integrative approach for prioritizing cancer genes in sporadic colon cancer.
Q33744507KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data.
Q33988970Lack of genomic heterogeneity at high-resolution aCGH between primary breast cancers and their paired lymph node metastases
Q33687060Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers
Q28512158Loss of p53 partially rescues embryonic development of Palb2 knockout mice but does not foster haploinsufficiency of Palb2 in tumour suppression
Q39294303Low-grade and high-grade mammary carcinomas in WAP-T transgenic mice are independent entities distinguished by Met expression
Q43214379MSB: a mean-shift-based approach for the analysis of structural variation in the genome
Q34257684Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses.
Q33455313Model-based clustering of array CGH data
Q33692591Multiscale representation of genomic signals
Q34614747Pitfalls in experimental designs for characterizing the transcriptional, methylational and copy number changes of oncogenes and tumor suppressor genes
Q37266084RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions
Q36945532RNF138 interacts with RAD51D and is required for DNA interstrand crosslink repair and maintaining chromosome integrity
Q37248153Sequential model selection-based segmentation to detect DNA copy number variation
Q33761768Specific genomic aberrations in primary colorectal cancer are associated with liver metastases
Q34345632TAGCNA: a method to identify significant consensus events of copy number alterations in cancer
Q41404014Whole-exome DNA sequence analysis of Brca2- and Trp53-deficient mouse mammary gland tumours

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