| scholarly article | Q13442814 |
| P2093 | author name string | Heilig R | |
| Dietrich J | |||
| Poch O | |||
| Thierry JC | |||
| Duprat S | |||
| Lecompte O | |||
| Puzos-Barbe V | |||
| Ripp R | |||
| P2860 | cites work | Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. | Q22065998 |
| Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3 | Q22066073 | ||
| Comparative genomes of Chlamydia pneumoniae and C. trachomatis | Q22122313 | ||
| Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori | Q22122443 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences | Q24548064 | ||
| Archaea and the prokaryote-to-eukaryote transition | Q24643523 | ||
| Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics | Q24676592 | ||
| An archaeal genomic signature | Q24678901 | ||
| A genomic perspective on protein families | Q27860913 | ||
| Estimation of primate speciation dates using local molecular clocks | Q28140490 | ||
| Testing for equality of evolutionary rates | Q28769465 | ||
| Measuring genome evolution | Q28776160 | ||
| BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data | Q29614291 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Distinguishing Homologous from Analogous Proteins | Q29617777 | ||
| Phylogenetic test of the molecular clock and linearized trees | Q29618226 | ||
| From complete genomes to measures of substitution rate variability within and between proteins | Q30651543 | ||
| Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup. | Q30656162 | ||
| Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. | Q30738900 | ||
| The impact of comparative genomics on our understanding of evolution | Q30885287 | ||
| Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough. | Q32051778 | ||
| Prokaryotic genomes: the emerging paradigm of genome-based microbiology | Q32118903 | ||
| Mycoplasma pneumoniae and Mycoplasma genitalium: a comparison of two closely related bacterial species | Q33538686 | ||
| Sulfolobus genome: from genomics to biology | Q33538698 | ||
| DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches | Q33617066 | ||
| Transfer RNAs and pathogenicity islands. | Q33702191 | ||
| Where is the root of the universal tree of life? | Q33738556 | ||
| Phylogenetic invariants for genome rearrangements | Q33785257 | ||
| Insights into the evolutionary process of genome degradation | Q33801561 | ||
| Deletions at stalled replication forks occur by two different pathways | Q33886806 | ||
| Ability of a bacterial chromosome segment to invert is dictated by included material rather than flanking sequence | Q33958786 | ||
| Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster | Q33968789 | ||
| Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea | Q34447405 | ||
| What are archaebacteria: life's third domain or monoderm prokaryotes related to gram-positive bacteria? A new proposal for the classification of prokaryotic organisms | Q34751832 | ||
| The genomic tree as revealed from whole proteome comparisons | Q35023050 | ||
| Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum | Q35578425 | ||
| Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile | Q35608034 | ||
| Hyperrecombination in the terminus region of the Escherichia coli chromosome: possible relation to nucleoid organization. | Q35983693 | ||
| Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium | Q35984062 | ||
| Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium | Q39719225 | ||
| Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. | Q40447816 | ||
| Archaebacterial genomes: eubacterial form and eukaryotic content | Q40611786 | ||
| Archaeal genomics: do archaea have a mixed heritage? | Q41725740 | ||
| DNA repair systems in archaea: mementos from the last universal common ancestor? | Q42609892 | ||
| Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae | Q42624676 | ||
| Genome sequence comparison and scenarios for gene rearrangements: a test case | Q48069151 | ||
| Rearrangement of the bacterial chromosome: forbidden inversions | Q50197324 | ||
| Genome plasticity as a paradigm of eubacteria evolution. | Q54573000 | ||
| SSV1-encoded site-specific recombination system in Sulfolobus shibatae. | Q54660904 | ||
| Universal Protein Families and the Functional Content of the Last Universal Common Ancestor | Q57179976 | ||
| Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry? | Q57179977 | ||
| Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles | Q57263144 | ||
| Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon | Q60134797 | ||
| Non-orthologous gene displacement | Q71651862 | ||
| Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA | Q73816106 | ||
| The evolutionary relationships between the two bacteria Escherichia coli and Haemophilus influenzae and their putative last common ancestor | Q74275850 | ||
| Sensitivity of the relative-rate test to taxonomic sampling | Q77211473 | ||
| P433 | issue | 6 | |
| P921 | main subject | Archaea | Q10872 |
| P304 | page(s) | 981-993 | |
| P577 | publication date | 2001-06-01 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea | |
| P478 | volume | 11 |
| Q34327616 | A comparative genomic method for computational identification of prokaryotic translation initiation sites |
| Q24807153 | A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes |
| Q24657357 | A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei |
| Q58003354 | Adaptive evolution of genes of archaea belonging to the genus Pyrococcus associated with adaptation to life under high-pressure conditions |
| Q37115746 | Analysis of genes that encode DtxR-like transcriptional regulators in pathogenic and saprophytic corynebacterial species |
| Q37830691 | Archaeal RNA polymerase and transcription regulation. |
| Q24540089 | Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins |
| Q41867137 | Biogeography and evolution of Thermococcus isolates from hydrothermal vent systems of the Pacific |
| Q99241139 | Biomass-degrading glycoside hydrolases of archaeal origin |
| Q33994248 | Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences |
| Q41542545 | Cloning, purification and crystallization of a Walker-type Pyrococcus abyssi ATPase family member. |
| Q41862596 | Cloning, purification, crystallization and preliminary crystallographic analysis of a penicillin-binding protein homologue from Pyrococcus abyssi. |
| Q30448429 | Comparative genomic hybridizations of Entamoeba strains reveal unique genetic fingerprints that correlate with virulence |
| Q42234931 | Comparative genomics reveals birth and death of fragile regions in mammalian evolution |
| Q22065752 | Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes |
| Q34165738 | Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi |
| Q56887724 | Current Awareness on Comparative and Functional Genomics |
| Q24527375 | Decoding the genomic tree of life |
| Q37424795 | Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. |
| Q34308577 | Evolutionary analysis by whole-genome comparisons |
| Q54447880 | Functional characterization of a NapA Na(+)/H(+) antiporter from Thermus thermophilus. |
| Q22065288 | Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea |
| Q39612589 | Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome |
| Q21343029 | Identification of replication origins in archaeal genomes based on the Z-curve method |
| Q35740880 | Insertion sequence diversity in archaea |
| Q57056991 | Limited Lifespan of Fragile Regions in Mammalian Evolution |
| Q34109940 | Metabolic and evolutionary relationships among Pyrococcus Species: genetic exchange within a hydrothermal vent environment. |
| Q74431979 | Modularity in the gain and loss of genes: applications for function prediction |
| Q30910575 | Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis |
| Q33521360 | Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions |
| Q34280166 | Multiple alignment of complete sequences (MACS) in the post-genomic era. |
| Q35207542 | PipeAlign: A new toolkit for protein family analysis |
| Q30002328 | Prediction of novel archaeal enzymes from sequence-derived features |
| Q39600831 | Pyrococcus genome comparison evidences chromosome shuffling-driven evolution |
| Q42623891 | Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638. |
| Q36049234 | Recombinant expression library of Pyrococcus furiosus constructed by high-throughput cloning: a useful tool for functional and structural genomics |
| Q42634227 | Structural and transcriptional analyses of a purine nucleotide-binding protein from Pyrococcus furiosus: a component of a novel, membrane-bound multiprotein complex unique to this hyperthermophilic archaeon |
| Q42066132 | Structural basis of substrate selectivity of E. coli prolidase |
| Q21284294 | The COG database: an updated version includes eukaryotes |
| Q34636738 | The impact of extremophiles on structural genomics (and vice versa). |
| Q36992142 | The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods |
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