Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data

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Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...879736H
P356DOI10.1371/JOURNAL.PONE.0079736
P932PMC publication ID3820610
P698PubMed publication ID24244551
P5875ResearchGate publication ID258639295

P50authorJohannes VogtQ30504191
Jan BaumgartQ56683670
Peter HusenQ56683671
Christer S EjsingQ40356320
P2093author name stringRobert Nitsch
Kim Ekroos
Kirill Tarasov
Elena Sokol
Maciej Katafiasz
P2860cites workFlexibility of a eukaryotic lipidome--insights from yeast lipidomicsQ21134862
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Molecular anatomy of a trafficking organelleQ28274481
Multi-dimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analysesQ28732813
Accumulation of raft lipids in T-cell plasma membrane domains engaged in TCR signallingQ30486555
Synaptic PRG-1 modulates excitatory transmission via lipid phosphate-mediated signaling.Q30541600
Microarray data mining with visual programming.Q30952033
Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisitionQ31029597
Software tools for analysis of mass spectrometric lipidome dataQ31085171
Algorithm for processing raw mass spectrometric data to identify and quantitate complex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searchingQ31122659
A shotgun tandem mass spectrometric analysis of phospholipids with normal-phase and/or reverse-phase liquid chromatography/electrospray ionization mass spectrometryQ33211609
Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method.Q51000987
lipID--a software tool for automated assignment of lipids in mass spectra.Q54397317
Automated Identification and Quantification of Glycerophospholipid Molecular Species by Multiple Precursor Ion ScanningQ57364873
Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3fragmentationQ57375067
Quantitative profiling of PE, MMPE, DMPE, and PC lipid species by multiple precursor ion scanning: A tool for monitoring PE metabolismQ57907281
Lipidomics: coming to grips with lipid diversityQ57959842
Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectraQ80254306
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Fatty acid analysis tool (FAAT): An FT-ICR MS lipid analysis algorithmQ33252333
A mouse macrophage lipidomeQ34400967
The HIV lipidome: a raft with an unusual compositionQ34479764
Membrane lipidome of an epithelial cell lineQ34549906
Lipid composition of the normal human brain: gray matter, white matter, and myelinQ34706165
Informatics and computational strategies for the study of lipids.Q34739639
A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query languageQ34964438
Segregation of sphingolipids and sterols during formation of secretory vesicles at the trans-Golgi networkQ34980423
Comparative lipidomic analysis of mouse and human brain with Alzheimer disease.Q35710041
Effects of diet and development on the Drosophila lipidomeQ36171156
Cellular lipidomicsQ36247057
Lipidomic profiling in mouse brain reveals differences between ages and genders, with smaller changes associated with alpha-synuclein genotypeQ37363512
Shorthand notation for lipid structures derived from mass spectrometry.Q40470345
Determination of cholesterol at the low picomole level by nano-electrospray ionization tandem mass spectrometry.Q40985348
High throughput quantification of cholesterol and cholesteryl ester by electrospray ionization tandem mass spectrometry (ESI-MS/MS).Q46928125
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue11
P407language of work or nameEnglishQ1860
P921main subjectsoftwareQ7397
software frameworkQ271680
P304page(s)e79736
P577publication date2013-11-07
P1433published inPLOS OneQ564954
P1476titleAnalysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data
P478volume8

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