Refining carbon flux paths using atomic trace data

scientific article

Refining carbon flux paths using atomic trace data is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bioinformatics/PeyPB14
P356DOI10.1093/BIOINFORMATICS/BTT653
P698PubMed publication ID24273244

P50authorJohn E. BeasleyQ43269016
P2093author name stringFrancisco J Planes
Jon Pey
P2860cites workA network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotypeQ34839535
Can sugars be produced from fatty acids? A test case for pathway analysis tools.Q34913005
A critical examination of stoichiometric and path-finding approaches to metabolic pathways.Q37147567
EcoCyc: a comprehensive view of Escherichia coli biologyQ37202580
Common patterns - unique features: nitrogen metabolism and regulation in Gram-positive bacteriaQ37718878
Carbon-fate maps for metabolic reactions.Q38394459
Path finding methods accounting for stoichiometry in metabolic networks.Q39221698
Metabolic flux elucidation for large-scale models using 13C labeled isotopesQ41918100
Computing the shortest elementary flux modes in genome-scale metabolic networksQ43268971
In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.Q43272344
Accurate atom-mapping computation for biochemical reactionsQ46043501
Construction of an E. Coli genome-scale atom mapping model for MFA calculations.Q50687745
Exploring metabolic pathways in genome-scale networks via generating flux modesQ57988535
A note on two problems in connexion with graphsQ21694527
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
Network-based analysis of metabolic regulation in the human red blood cellQ28212164
Metabolic network structure determines key aspects of functionality and regulationQ28214885
KEGG for integration and interpretation of large-scale molecular data setsQ29547277
Systems biology: a brief overviewQ29547514
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationQ29615371
Selection of human tissue-specific elementary flux modes using gene expression dataQ30642199
Metatool 5.0: fast and flexible elementary modes analysisQ33244990
Large-scale computation of elementary flux modes with bit pattern treesQ33357233
Inferring branching pathways in genome-scale metabolic networksQ33513747
Reactive oxygen species production by forward and reverse electron fluxes in the mitochondrial respiratory chainQ33869041
Finding metabolic pathways using atom trackingQ33896349
Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes.Q34226005
P433issue7
P407language of work or nameEnglishQ1860
P1104number of pages6
P304page(s)975-980
P577publication date2013-11-21
P1433published inBioinformaticsQ4914910
P1476titleRefining carbon flux paths using atomic trace data
P478volume30

Reverse relations

cites work (P2860)
Q28468365A Method for Finding Metabolic Pathways Using Atomic Group Tracking
Q52350929A review of computational tools for design and reconstruction of metabolic pathways.
Q42737166A review of parameters and heuristics for guiding metabolic pathfinding
Q43004285Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D.
Q47201044Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis.
Q49980041FindPrimaryPairs: An efficient algorithm for predicting element-transferring reactant/product pairs in metabolic networks
Q92559423Improving the organization and interactivity of metabolic pathfinding with precomputed pathways
Q41859031MapMaker and PathTracer for tracking carbon in genome-scale metabolic models.
Q51533799Metabolic assessment of E. coli as a Biofactory for commercial products.
Q38630213Network design and analysis for multi-enzyme biocatalysis
Q50541862Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites.
Q42692423TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm

Search more.