| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/FigueiredoPRKBSP09 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTP564 |
| P698 | PubMed publication ID | 19793869 |
| P5875 | ResearchGate publication ID | 26860495 |
| P50 | author | Stefan Schuster | Q2337635 |
| Adam Podhorski | Q43269010 | ||
| John E. Beasley | Q43269016 | ||
| Luís F de Figueiredo | Q37611344 | ||
| Angel Rubio | Q38319376 | ||
| Christoph Kaleta | Q41046138 | ||
| P2093 | author name string | Francisco J Planes | |
| P2860 | cites work | A strategy for increasing an in vivo flux by genetic manipulations. The tryptophan system of yeast | Q42801770 |
| Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism | Q44104377 | ||
| Metabolic flux and metabolic network analysis of Penicillium chrysogenum using 2D [13C, 1H] COSY NMR measurements and cumulative bondomer simulation | Q44436878 | ||
| A method for classifying metabolites in topological pathway analyses based on minimization of pathway number | Q44563793 | ||
| A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. | Q44578300 | ||
| Metabolic analysis of Corynebacterium glutamicum during lactate and succinate productions under oxygen deprivation conditions | Q45071355 | ||
| Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber | Q45152641 | ||
| In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network | Q46263627 | ||
| Role of GldA in dihydroxyacetone and methylglyoxal metabolism of Escherichia coli K12. | Q46819724 | ||
| Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model | Q51114019 | ||
| Recovering metabolic pathways via optimization | Q51930134 | ||
| Combinatorial complexity of pathway analysis in metabolic networks | Q52032425 | ||
| Computer-aided synthesis of biochemical pathways | Q52465888 | ||
| Kinetic flux profiling of nitrogen assimilation in Escherichia coli. | Q54456914 | ||
| Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. | Q54579293 | ||
| ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE | Q57320469 | ||
| Structural and functional analysis of cellular networks with CellNetAnalyzer | Q21202799 | ||
| Physiological control of metabolic flux: the requirement for multisite modulation | Q24528216 | ||
| Computation of elementary modes: a unifying framework and the new binary approach | Q24803776 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Dihydroxyacetone kinases in Saccharomyces cerevisiae are involved in detoxification of dihydroxyacetone | Q27935617 | ||
| A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks | Q28145745 | ||
| Evolution of cross-feeding in microbial populations | Q28273191 | ||
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information | Q29615371 | ||
| Genome-scale models of microbial cells: evaluating the consequences of constraints | Q29616789 | ||
| Integrated network reconstruction, visualization and analysis using YANAsquare. | Q30480219 | ||
| Modes and cuts in metabolic networks: complexity and algorithms | Q30544012 | ||
| Metatool 5.0: fast and flexible elementary modes analysis | Q33244990 | ||
| Large-scale computation of elementary flux modes with bit pattern trees | Q33357233 | ||
| Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. | Q33543834 | ||
| The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins | Q33968067 | ||
| Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for biotechnological production of organic acids and amino acids | Q36450318 | ||
| Algorithmic approaches for computing elementary modes in large biochemical reaction networks. | Q36598563 | ||
| Understanding the roadmap of metabolism by pathway analysis | Q36621274 | ||
| Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction | Q37210160 | ||
| Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism | Q37328003 | ||
| Biology of L-lysine overproduction byCorynebacterium glutamicum | Q38159921 | ||
| Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective | Q41724911 | ||
| Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns | Q42588973 | ||
| P433 | issue | 23 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | flux | Q5463013 |
| metabolic network | Q2263094 | ||
| P304 | page(s) | 3158-3165 | |
| P577 | publication date | 2009-09-30 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | Computing the shortest elementary flux modes in genome-scale metabolic networks | |
| P478 | volume | 25 |
| Q28468365 | A Method for Finding Metabolic Pathways Using Atomic Group Tracking |
| Q35215331 | A depth-first search algorithm to compute elementary flux modes by linear programming |
| Q33812153 | A new computational method to split large biochemical networks into coherent subnets |
| Q31090599 | A principal components method constrained by elementary flux modes: analysis of flux data sets. |
| Q52350929 | A review of computational tools for design and reconstruction of metabolic pathways |
| Q51626452 | ACoM: A classification method for elementary flux modes based on motif finding |
| Q64093387 | Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth |
| Q33622451 | Adaptive evolution of complex innovations through stepwise metabolic niche expansion. |
| Q30777076 | Advances in network-based metabolic pathway analysis and gene expression data integration. |
| Q90117746 | An analytical theory of balanced cellular growth |
| Q41632506 | An in-silico approach to predict and exploit synthetic lethality in cancer metabolism |
| Q33922321 | Analysis of complex metabolic behavior through pathway decomposition |
| Q28551811 | Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method |
| Q104468861 | Automated engineering of synthetic metabolic pathways for efficient association to reaction rules.biomanufacturing |
| Q38103147 | Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli |
| Q27002569 | Bioinformatic approaches for functional annotation and pathway inference in metagenomics data |
| Q92911343 | Comparison of pathway analysis and constraint-based methods for cell factory design |
| Q33641931 | Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition |
| Q34785750 | Computational strategies for a system-level understanding of metabolism |
| Q47266589 | Designing Optimized Production Hosts by Metabolic Modeling |
| Q48446993 | Detecting and investigating substrate cycles in a genome-scale human metabolic network |
| Q36290912 | Development of a Framework for Metabolic Pathway Analysis-Driven Strain Optimization Methods |
| Q56913589 | Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models |
| Q39788105 | Direct calculation of minimal cut sets involving a specific reaction knock-out |
| Q39043466 | EColiCore2: a reference network model of the central metabolism of Escherichia coli and relationships to its genome-scale parent model |
| Q89720103 | EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models |
| Q38053353 | Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways |
| Q38115989 | Elementary flux modes in a nutshell: properties, calculation and applications. |
| Q51733274 | Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress |
| Q91982856 | Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models |
| Q55517656 | Enumerating all possible biosynthetic pathways in metabolic networks. |
| Q34152075 | Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms |
| Q36146603 | Enumeration of minimal stoichiometric precursor sets in metabolic networks |
| Q28538235 | Enumeration of smallest intervention strategies in genome-scale metabolic networks |
| Q103027935 | Environmental flexibility does not explain metabolic robustness |
| Q56913611 | Evaluating Pathway Enumeration Algorithms in Metabolic Engineering Case Studies |
| Q27304396 | Exact quantification of cellular robustness in genome-scale metabolic networks. |
| Q47096825 | Find_tfSBP: find thermodynamics-feasible and smallest balanced pathways with high yield from large-scale metabolic networks |
| Q46236534 | Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism. |
| Q51247849 | Finding minimal generating set for metabolic network with reversible pathways |
| Q45814645 | Flux modules in metabolic networks |
| Q36345811 | From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. |
| Q38771023 | Identification of metabolic pathways using pathfinding approaches: a systematic review |
| Q59336719 | Improving the EFMs quality by augmenting their representativeness in LP methods |
| Q28083571 | In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories |
| Q21090161 | In silico evidence for gluconeogenesis from fatty acids in humans |
| Q35219399 | In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes |
| Q30578962 | Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli |
| Q97094144 | Intensified design of experiments for upstream bioreactors |
| Q41886452 | Invariants and Other Structural Properties of Biochemical Models as a Constraint Satisfaction Problem |
| Q64101021 | Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data |
| Q30832950 | Metabolic Consequences of TGFb Stimulation in CulturedPrimary Mouse Hepatocytes Screened from Transcript Data with ModeScore |
| Q35574156 | Metabolomics integrated elementary flux mode analysis in large metabolic networks. |
| Q34986572 | Minimal metabolic pathway structure is consistent with associated biomolecular interactions |
| Q60044773 | MoVE identifies metabolic valves to switch between phenotypic states |
| Q91948923 | Novel column generation-based optimization approach for poly-pathway kinetic model applied to CHO cell culture |
| Q63952409 | OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques |
| Q51023424 | On dynamically generating relevant elementary flux modes in a metabolic network using optimization |
| Q39221698 | Path finding methods accounting for stoichiometry in metabolic networks. |
| Q56987263 | Pathway analysis of NAD+metabolism |
| Q47564037 | Pathway design using de novo steps through uncharted biochemical spaces. |
| Q34231664 | Prediction of dynamic behavior of mutant strains from limited wild-type data |
| Q39449548 | Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination. |
| Q38968451 | Promise and reality in the expanding field of network interaction analysis: metabolic networks |
| Q50157049 | RETRACTED: Poly-pathway model, a novel approach to simulate multiple metabolic states by reaction network-based model - Application to amino acid depletion in CHO cell culture |
| Q34409668 | Random sampling of elementary flux modes in large-scale metabolic networks |
| Q40397149 | Rational design of efficient modular cells |
| Q38525312 | Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies. |
| Q35052294 | Refining carbon flux paths using atomic trace data |
| Q35212011 | RobOKoD: microbial strain design for (over)production of target compounds |
| Q33789634 | SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants |
| Q53389524 | SSDesign: Computational metabolic pathway design based on flux variability using elementary flux modes. |
| Q38748541 | Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling. |
| Q38860422 | Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming |
| Q28473485 | Signatures of arithmetic simplicity in metabolic network architecture |
| Q38059081 | Software applications toward quantitative metabolic flux analysis and modeling |
| Q36154863 | Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction |
| Q28537786 | Structural control of metabolic flux |
| Q33909392 | Symbolic flux analysis for genome-scale metabolic networks |
| Q28277483 | Systems Analysis of Microbial Adaptations to Simultaneous Stresses |
| Q37929450 | Systems approaches to modelling pathways and networks |
| Q92907800 | Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum |
| Q42692423 | TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm |
| Q33563265 | Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design |
| Q37751917 | Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators. |
| Q37105686 | Which sets of elementary flux modes form thermodynamically feasible flux distributions? |
| Q41071118 | lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites |
| Q38670060 | redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models |
| Q41378659 | tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks |
Search more.