Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism.

scientific article published in December 2013

Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S10529-013-1328-X
P698PubMed publication ID24078125

P50authorSayed-Amir MarashiQ38801186
P2093author name stringShayan Tabe-Bordbar
P2860cites workAnalysis of metabolic subnetworks by flux cone projection.Q41791571
Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patternsQ42588973
Metabolic modeling of endosymbiont genome reduction on a temporal scaleQ42733463
CASOP: a computational approach for strain optimization aiming at high productivityQ43123413
Computing the shortest elementary flux modes in genome-scale metabolic networksQ43268971
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniaeQ43887992
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy.Q44019204
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networksQ44843938
The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropiesQ51236033
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)Q21194867
Computation of elementary modes: a unifying framework and the new binary approachQ24803776
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
Metabolic network structure determines key aspects of functionality and regulationQ28214885
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Q28246991
Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentosesQ28757815
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiaeQ33281135
Large-scale computation of elementary flux modes with bit pattern treesQ33357233
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.Q33543834
Chance and necessity in the evolution of minimal metabolic networksQ33994506
F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networksQ34242017
Random sampling of elementary flux modes in large-scale metabolic networksQ34409668
Genome-scale microbial in silico models: the constraints-based approach.Q35101082
Mathematical optimization applications in metabolic networksQ38048435
Observing metabolic functions at the genome scaleQ38606272
Flux coupling analysis of genome-scale metabolic network reconstructions.Q40497938
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysisQ41724916
P433issue12
P921main subjectEscherichia coliQ25419
metabolic networkQ2263094
fluxQ5463013
P304page(s)2039-2044
P577publication date2013-12-01
P1433published inBiotechnology LettersQ4915332
P1476titleFinding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism
P478volume35

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cites work (P2860)
Q35668661Avoiding the Enumeration of Infeasible Elementary Flux Modes by Including Transcriptional Regulatory Rules in the Enumeration Process Saves Computational Costs
Q40815192Characterizing the optimal flux space of genome-scale metabolic reconstructions through modified latin-hypercube sampling
Q49047274Efficient whole-cell biocatalyst for Neu5Ac production by manipulating synthetic, degradation and transmembrane pathways
Q91948923Novel column generation-based optimization approach for poly-pathway kinetic model applied to CHO cell culture
Q51023424On dynamically generating relevant elementary flux modes in a metabolic network using optimization
Q54237638Phosphoenolpyruvate-supply module in Escherichia coli improves N-acetyl-D-neuraminic acid biocatalysis
Q50157049RETRACTED: Poly-pathway model, a novel approach to simulate multiple metabolic states by reaction network-based model - Application to amino acid depletion in CHO cell culture
Q28537786Structural control of metabolic flux
Q59034378Studying the relationship between robustness against mutations in metabolic networks and lifestyle of organisms

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