Analysis of metabolic subnetworks by flux cone projection.

scientific article published on 29 May 2012

Analysis of metabolic subnetworks by flux cone projection. is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/almob/MarashiDB12
P6179Dimensions Publication ID1020320858
P356DOI10.1186/1748-7188-7-17
P932PMC publication ID3408373
P698PubMed publication ID22642830
P5875ResearchGate publication ID225072275

P50authorAlexander BockmayrQ47760652
Sayed-Amir MarashiQ38801186
P2093author name stringLaszlo David
P2860cites workGenome-scale metabolic model of Helicobacter pylori 26695.Q39679903
Flux coupling analysis of genome-scale metabolic network reconstructions.Q40497938
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspectiveQ41724911
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysisQ41724916
On algebraic properties of extreme pathways in metabolic networksQ41912451
Network organization of cell metabolism: monosaccharide interconversionQ42218850
Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patternsQ42588973
Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysisQ43188623
Expa: a program for calculating extreme pathways in biochemical reaction networksQ43786003
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniaeQ43887992
A hybrid model of anaerobic E. coli GJT001: combination of elementary flux modes and cybernetic variablesQ44615284
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networksQ44843938
Constraints-based models: regulation of gene expression reduces the steady-state solution spaceQ45211444
Reduction of a set of elementary modes using yield analysisQ46318034
Genetic modification of flux for flux prediction of mutantsQ47728960
Functional stoichiometric analysis of metabolic networksQ48473247
On flux coupling analysis of metabolic subsystemsQ51405491
Enumerating constrained elementary flux vectors of metabolic networksQ51904893
Combinatorial complexity of pathway analysis in metabolic networksQ52032425
METATOOL: for studying metabolic networks.Q52216547
Flux coupling analysis of metabolic networks is sensitive to missing reactionsQ54378287
A note on the complexity of finding and enumerating elementary modesQ84983163
Structural and functional analysis of cellular networks with CellNetAnalyzerQ21202799
AraGEM, a genome-scale reconstruction of the primary metabolic network in ArabidopsisQ24654215
Computation of elementary modes: a unifying framework and the new binary approachQ24803776
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activitiesQ24811241
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
Metabolic network structure determines key aspects of functionality and regulationQ28214885
SNA--a toolbox for the stoichiometric analysis of metabolic networksQ33236279
Metatool 5.0: fast and flexible elementary modes analysisQ33244990
Estimation of the number of extreme pathways for metabolic networksQ33300475
Large-scale computation of elementary flux modes with bit pattern treesQ33357233
Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisationQ33466794
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.Q33543834
Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.Q33651317
A new computational method to split large biochemical networks into coherent subnetsQ33812153
Extreme pathway analysis of human red blood cell metabolismQ34178460
The geometry of the flux cone of a metabolic networkQ34352367
Two approaches for metabolic pathway analysis?Q35062587
Algorithmic approaches for computing elementary modes in large biochemical reaction networks.Q36598563
Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolismQ37328003
Genome‐scale metabolic networksQ37787963
Exploiting the pathway structure of metabolism to reveal high-order epistasisQ38565870
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P433issue1
P304page(s)17
P577publication date2012-05-29
P1433published inAlgorithms for Molecular BiologyQ15749320
P1476titleAnalysis of metabolic subnetworks by flux cone projection
P478volume7

Reverse relations

cites work (P2860)
Q38851278Elementary Vectors and Conformal Sums in Polyhedral Geometry and their Relevance for Metabolic Pathway Analysis
Q27025838Exploiting stoichiometric redundancies for computational efficiency and network reduction
Q46236534Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism.
Q40612591Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501.
Q38860422Sequential computation of elementary modes and minimal cut sets in genome-scale metabolic networks using alternate integer linear programming

Search more.