| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/PfeifferSNMS99 |
| P356 | DOI | 10.1093/BIOINFORMATICS/15.3.251 |
| P698 | PubMed publication ID | 10222413 |
| P5875 | ResearchGate publication ID | 220263421 |
| P50 | author | Francisco Montero | Q41049607 |
| Juan Carlos Nuño | Q59556048 | ||
| Stefan Schuster | Q2337635 | ||
| P2093 | author name string | T Pfeiffer | |
| I Sánchez-Valdenebro | |||
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | metabolic network | Q2263094 |
| P1104 | number of pages | 7 | |
| P304 | page(s) | 251-257 | |
| P577 | publication date | 1999-03-01 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | METATOOL: for studying metabolic networks | |
| P478 | volume | 15 |
| Q28655939 | 'Isotopo' a database application for facile analysis and management of mass isotopomer data |
| Q42876917 | A detailed metabolic flux analysis of an underdetermined network of CHO cells |
| Q28145745 | A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks |
| Q44505933 | A metabolic network analysis & NMR experiment design tool with user interface-driven model construction for depth-first search analysis. |
| Q44563793 | A method for classifying metabolites in topological pathway analyses based on minimization of pathway number |
| Q33233350 | A methodology for the structural and functional analysis of signaling and regulatory networks |
| Q36238793 | A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks |
| Q51092618 | ADMET: ADipocyte METabolism mathematical model |
| Q30777076 | Advances in network-based metabolic pathway analysis and gene expression data integration. |
| Q28658520 | An efficient graph theory based method to identify every minimal reaction set in a metabolic network |
| Q51114019 | Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model |
| Q41791571 | Analysis of metabolic subnetworks by flux cone projection. |
| Q28346406 | Analysis of sucrose accumulation in the sugar cane culm on the basis of in vitro kinetic data |
| Q90507042 | Application of Dynamic Metabolic Flux Analysis for Process Modeling: Robust Flux Estimation with Regularization, Confidence Bounds and Selection of Elementary Modes |
| Q64986108 | Aspergillus fumigatus Challenged by Human Dendritic Cells: Metabolic and Regulatory Pathway Responses Testify a Tight Battle. |
| Q42163019 | Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria |
| Q44144864 | Calculating as many fluxes as possible in underdetermined metabolic networks |
| Q42588973 | Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns |
| Q48082152 | Carbon cycling in Anabaena sp. PCC 7120. Sucrose synthesis in the heterocysts and possible role in nitrogen fixation |
| Q24646495 | Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks |
| Q34612133 | Comparative genome analysis and pathway reconstruction |
| Q37788044 | Comparative systems biology: from bacteria to man |
| Q33935547 | Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells |
| Q24803776 | Computation of elementary modes: a unifying framework and the new binary approach |
| Q38715258 | Computational methods to identify metabolic sub-networks based on metabolomic profiles. |
| Q28551270 | Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach |
| Q82178748 | Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1 |
| Q51129487 | Design, construction and performance of the most efficient biomass producing E. coli bacterium |
| Q42609940 | Designing overall stoichiometric conversions and intervening metabolic reactions |
| Q52016171 | DiMSim: a discrete-event simulator of metabolic networks |
| Q41841619 | Double and multiple knockout simulations for genome-scale metabolic network reconstructions |
| Q47437470 | Dynamic generation and qualitative analysis of metabolic pathways by a joint database/graph theoretical approach |
| Q40341004 | Dynamic metabolic flux analysis using a convex analysis approach: Application to hybridoma cell cultures in perfusion |
| Q42419264 | Elementary Mode Analysis for the Rational Design of Efficient Succinate Conversion from Glycerol by Escherichia coli |
| Q38053353 | Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways |
| Q35034565 | Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation |
| Q37328003 | Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism |
| Q43026004 | Elucidating central metabolic redox obstacles hindering ethanol production in Clostridium thermocellum |
| Q34188505 | Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions |
| Q55152451 | Energy-based analysis of biomolecular pathways. |
| Q34001801 | Environmental versatility promotes modularity in genome-scale metabolic networks |
| Q28475317 | Evolution under fluctuating environments explains observed robustness in metabolic networks |
| Q30884193 | Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica |
| Q25257616 | Evolutionary programming as a platform for in silico metabolic engineering |
| Q33350707 | Exhaustive identification of steady state cycles in large stoichiometric networks |
| Q37585376 | Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs. |
| Q24682088 | Extreme pathway lengths and reaction participation in genome-scale metabolic networks |
| Q34242017 | F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks |
| Q33800030 | FASIMU: flexible software for flux-balance computation series in large metabolic networks |
| Q33933759 | FFCA: a feasibility-based method for flux coupling analysis of metabolic networks |
| Q40497938 | Flux coupling analysis of genome-scale metabolic network reconstructions. |
| Q54378287 | Flux coupling analysis of metabolic networks is sensitive to missing reactions |
| Q47878737 | Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks. |
| Q39687159 | GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing |
| Q33391538 | Genome-scale models of bacterial metabolism: reconstruction and applications |
| Q29616789 | Genome-scale models of microbial cells: evaluating the consequences of constraints |
| Q38679523 | Green pathways: Metabolic network analysis of plant systems |
| Q51606560 | HEMETβ: improvement of hepatocyte metabolism mathematical model |
| Q28536028 | Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei |
| Q28708812 | Identification of metabolic engineering targets through analysis of optimal and sub-optimal routes |
| Q38771023 | Identification of metabolic pathways using pathfinding approaches: a systematic review |
| Q43272344 | In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. |
| Q24608319 | Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth |
| Q30480219 | Integrated network reconstruction, visualization and analysis using YANAsquare. |
| Q31064013 | Integration of metabolome data with metabolic networks reveals reporter reactions |
| Q24669561 | Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets |
| Q37993825 | Kinetic modelling of plant metabolic pathways |
| Q33789544 | Kinetic studies and biochemical pathway analysis of anaerobic poly-(R)-3-hydroxybutyric acid synthesis in Escherichia coli |
| Q34534218 | Low degree metabolites explain essential reactions and enhance modularity in biological networks. |
| Q34464555 | MC3: a steady-state model and constraint consistency checker for biochemical networks |
| Q47589234 | Mathematical modeling of living cell metabolism using the method of steady-state stoichiometric flux balance |
| Q35550669 | Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease |
| Q35574608 | Metabolic design of macroscopic bioreaction models: application to Chinese hamster ovary cells |
| Q51577942 | Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos |
| Q35669684 | Metabolic networks evolve towards states of maximum entropy production |
| Q45919578 | Metabolic pathway analysis and kinetic studies for production of nattokinase in Bacillus subtilis. |
| Q40333389 | Metabolic pathway analysis for rational design of L-methionine production by Escherichia coli and Corynebacterium glutamicum |
| Q44062430 | Metabolic pathway analysis of a recombinant yeast for rational strain development |
| Q44843938 | Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks |
| Q35135595 | Metabolic pathways in the post-genome era. |
| Q28540942 | Metabolomics – the link between genotypes and phenotypes |
| Q33244990 | Metatool 5.0: fast and flexible elementary modes analysis |
| Q48231693 | Model-based biotechnological potential analysis of Kluyveromyces marxianus central metabolism. |
| Q34495082 | Modeling and simulation: tools for metabolic engineering |
| Q38490620 | Modelling cellular systems with PySCeS. |
| Q34657714 | MonaLisa—visualization and analysis of functional modules in biochemical networks |
| Q33910761 | Multi-tissue computational modeling analyzes pathophysiology of type 2 diabetes in MKR mice |
| Q35015314 | Network genomics--a novel approach for the analysis of biological systems in the post-genomic era. |
| Q33236264 | Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition |
| Q51342628 | Observation conflict resolution in steady-state metabolic network dynamics analysis |
| Q41912451 | On algebraic properties of extreme pathways in metabolic networks |
| Q41889877 | On functional module detection in metabolic networks |
| Q45967378 | On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning. |
| Q34068514 | Parallelization of Nullspace Algorithm for the computation of metabolic pathways |
| Q34505049 | Pathway alignment: application to the comparative analysis of glycolytic enzymes |
| Q51637852 | Pathway knockout and redundancy in metabolic networks |
| Q35785222 | Pharmacogenomic strategies against resistance development in microbial infections |
| Q84978540 | Predictive modeling of biomass component tradeoffs in Brassica napus developing oilseeds based on in silico manipulation of storage metabolism |
| Q33238510 | Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis |
| Q43976166 | Querying metabolism under different physiological constraints |
| Q33871402 | Rational design and construction of an efficient E. coli for production of diapolycopendioic acid |
| Q40397149 | Rational design of efficient modular cells |
| Q21246032 | Rational improvement of the engineered isobutanol-producing Bacillus subtilis by elementary mode analysis |
| Q38525312 | Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies. |
| Q31126762 | Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data |
| Q28741973 | Redesigning Escherichia coli metabolism for anaerobic production of isobutanol |
| Q44693715 | Reduction techniques for network validation in systems biology |
| Q58744245 | Responses to light intensity in a genome-scale model of rice metabolism |
| Q33236279 | SNA--a toolbox for the stoichiometric analysis of metabolic networks |
| Q34803457 | Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling |
| Q26824185 | Software applications for flux balance analysis |
| Q35029546 | Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti. |
| Q28474052 | Spontaneous reaction silencing in metabolic optimization |
| Q39649177 | Structural analyses of a hypothetical minimal metabolism |
| Q46908031 | Study of metabolic network of Cupriavidus necator DSM 545 growing on glycerol by applying elementary flux modes and yield space analysis |
| Q37929450 | Systems approaches to modelling pathways and networks |
| Q51285896 | The Landscape of Evolution: Reconciling Structural and Dynamic Properties of Metabolic Networks in Adaptive Diversifications |
| Q33347636 | The Systems Biology Research Tool: evolvable open-source software |
| Q51236033 | The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropies |
| Q34352367 | The geometry of the flux cone of a metabolic network |
| Q33491534 | The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data |
| Q44132341 | Treatment of multifunctional enzymes in metabolic pathway analysis |
| Q35062587 | Two approaches for metabolic pathway analysis? |
| Q33466794 | Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation |
| Q34187246 | Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies. |
| Q33660953 | Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity. |
| Q37751917 | Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators. |
| Q21246028 | Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered Escherichia coli |
| Q24811241 | YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities |
Search more.