| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/S0968-0004(03)00064-1 |
| P698 | PubMed publication ID | 12765837 |
| P50 | author | Bernhard Palsson | Q4894212 |
| Jason A. Papin | Q37369558 | ||
| David A. Fell | Q42668859 | ||
| P2093 | author name string | Nathan D Price | |
| Sharon J Wiback | |||
| P2860 | cites work | Extreme pathway lengths and reaction participation in genome-scale metabolic networks | Q24682088 |
| A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks | Q28145745 | ||
| Metabolic network structure determines key aspects of functionality and regulation | Q28214885 | ||
| Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. | Q33543834 | ||
| Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era. | Q33651317 | ||
| Extreme pathway analysis of human red blood cell metabolism | Q34178460 | ||
| Metabolic modeling of microbial strains in silico. | Q34179356 | ||
| Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices | Q34180306 | ||
| Pathway alignment: application to the comparative analysis of glycolytic enzymes | Q34505049 | ||
| Metabolic modelling of microbes: the flux-balance approach | Q34631271 | ||
| Global properties of the metabolic map of Escherichia coli | Q35027310 | ||
| Metabolic control analysis: a survey of its theoretical and experimental development | Q35860764 | ||
| Stoichiometric network analysis | Q38188547 | ||
| Pathway databases: a case study in computational symbolic theories | Q38523514 | ||
| Genome-scale metabolic model of Helicobacter pylori 26695. | Q39679903 | ||
| Mathematical analysis of multienzyme systems. I. Modelling of the glycolysis of human erythrocytes | Q39946555 | ||
| Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective | Q41724911 | ||
| Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis | Q41724916 | ||
| Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria | Q42163019 | ||
| Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: computer simulation and metabolic control analysis | Q42994531 | ||
| Extreme pathways and Kirchhoff's second law. | Q43122158 | ||
| Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae | Q43887992 | ||
| Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism | Q43937903 | ||
| Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopy | Q43992565 | ||
| The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. | Q44019204 | ||
| Metabolic pathway analysis of a recombinant yeast for rational strain development | Q44062430 | ||
| Constraints-based models: regulation of gene expression reduces the steady-state solution space | Q45211444 | ||
| Dynamic simulation of the human red blood cell metabolic network | Q46231124 | ||
| The challenges of in silico biology | Q46255466 | ||
| An Algebraic-combinatorial Model for the Identification and Mapping of Biochemical Pathways | Q52050893 | ||
| METATOOL: for studying metabolic networks. | Q52216547 | ||
| Computer-aided synthesis of biochemical pathways | Q52465888 | ||
| Metabolic dynamics in the human red cell. Part I--A comprehensive kinetic model | Q52510891 | ||
| Metabolic control theory: a structural approach | Q52548981 | ||
| MPS: An artificially intelligent software system for the analysis and synthesis of metabolic pathways | Q52566720 | ||
| Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. | Q54579293 | ||
| ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE | Q57320469 | ||
| A functional genomics approach using metabolomics andin silicopathway analysis | Q59834052 | ||
| Integrated pathway–genome databases and their role in drug discovery | Q60309513 | ||
| Complex biology with no parameters | Q73954677 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | metabolic pathway | Q68685 |
| P1104 | number of pages | 9 | |
| P304 | page(s) | 250-258 | |
| P577 | publication date | 2003-05-01 | |
| P13046 | publication type of scholarly work | review article | Q7318358 |
| P1433 | published in | Trends in Biochemical Sciences | Q1565711 |
| P1476 | title | Metabolic pathways in the post-genome era. | |
| P478 | volume | 28 |
| Q35215331 | A depth-first search algorithm to compute elementary flux modes by linear programming |
| Q28754894 | A framework for evolutionary systems biology |
| Q44578300 | A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. |
| Q31090599 | A principal components method constrained by elementary flux modes: analysis of flux data sets. |
| Q33304395 | A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient |
| Q81157263 | Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry |
| Q30777076 | Advances in network-based metabolic pathway analysis and gene expression data integration. |
| Q51897409 | Algebraic method for the analysis of signaling crosstalk. |
| Q34921401 | Algorithmic and analytical methods in network biology |
| Q38017425 | Are we ready for genome-scale modeling in plants? |
| Q36982025 | Bacterial genome sequencing and its use in infectious diseases |
| Q39776363 | Bayesian flux balance analysis applied to a skeletal muscle metabolic model. |
| Q28472546 | Biosynthetic potentials of metabolites and their hierarchical organization |
| Q38300561 | Characterizing phenotype with tracer based metabolomics |
| Q38320332 | Clinical detection and characterization of bacterial pathogens in the genomics era. |
| Q33548126 | Comparative genomics of metabolic networks of free-living and parasitic eukaryotes |
| Q47593538 | Comparison of different approaches for identifying subnetworks in metabolic networks |
| Q33840569 | Comparison on extreme pathways reveals nature of different biological processes |
| Q24803776 | Computation of elementary modes: a unifying framework and the new binary approach |
| Q47374303 | Computational approaches to protein-protein interaction |
| Q34640884 | Computing minimal nutrient sets from metabolic networks via linear constraint solving |
| Q94101421 | Current Awareness on Comparative and Functional Genomics |
| Q37471556 | Database resources in metabolomics: an overview |
| Q44983542 | Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints |
| Q54995027 | Development of network-based pathway definitions: the need to analyze real metabolic networks |
| Q42430397 | Dynamic metabolic flux analysis demonstrated on cultures where the limiting substrate is changed from carbon to nitrogen and vice versa |
| Q35667308 | Elementary Flux Mode Analysis Revealed Cyclization Pathway as a Powerful Way for NADPH Regeneration of Central Carbon Metabolism |
| Q37328003 | Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism |
| Q33299957 | Environmental variability and modularity of bacterial metabolic networks |
| Q33300475 | Estimation of the number of extreme pathways for metabolic networks |
| Q29614449 | Evidence for dynamically organized modularity in the yeast protein-protein interaction network |
| Q33350707 | Exhaustive identification of steady state cycles in large stoichiometric networks |
| Q43786003 | Expa: a program for calculating extreme pathways in biochemical reaction networks |
| Q46697439 | Expanding metabolic networks: scopes of compounds, robustness, and evolution |
| Q24793117 | Extending knowledge of Escherichia coli metabolism by modeling and experiment |
| Q34646772 | Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: where drug discovery went wrong and how to fix it. |
| Q42801045 | Flexibility in energy metabolism supports hypoxia tolerance in Drosophila flight muscle: metabolomic and computational systems analysis |
| Q36748701 | Functional genomics in chickens: development of integrated-systems microarrays for transcriptional profiling and discovery of regulatory pathways |
| Q36945352 | Functional genomics of the chicken--a model organism. |
| Q37902554 | Functional proteomics: application of mass spectrometry to the study of enzymology in complex mixtures |
| Q28475555 | Functional states of the genome-scale Escherichia coli transcriptional regulatory system |
| Q42939175 | Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942. |
| Q39968205 | Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states. |
| Q34268420 | Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico |
| Q33391538 | Genome-scale models of bacterial metabolism: reconstruction and applications |
| Q29616789 | Genome-scale models of microbial cells: evaluating the consequences of constraints |
| Q28473829 | Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology |
| Q48621890 | Hexokinase and not glycogen synthase controls the flux through the glycogen synthesis pathway in frog oocytes |
| Q51141733 | In silico metabolic engineering of Clostridium ljungdahlii for synthesis gas fermentation |
| Q49270277 | Insights into metabolic osmoadaptation of the ectoines-producer bacterium Chromohalobacter salexigens through a high-quality genome scale metabolic model. |
| Q24795542 | Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae |
| Q33940698 | Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation |
| Q37993825 | Kinetic modelling of plant metabolic pathways |
| Q47310995 | Linking metabolic network features to phenotypes using sparse group lasso. |
| Q33879405 | Lipid body formation plays a central role in cell fate determination during developmental differentiation of Myxococcus xanthus |
| Q34157632 | Loss of dispensable genes is not adaptive in yeast |
| Q33806474 | MEMOSys: Bioinformatics platform for genome-scale metabolic models |
| Q28469032 | Matrix formalism to describe functional states of transcriptional regulatory systems |
| Q41789680 | MetaPath Online: a web server implementation of the network expansion algorithm |
| Q33849784 | Metabolic Network-Based Interpretation of Gene Expression Data Elucidates Human Cellular Metabolism |
| Q34188024 | Metabolic control analysis under uncertainty: framework development and case studies |
| Q38992090 | Metabolic modeling of synthesis gas fermentation in bubble column reactors |
| Q35778015 | Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis |
| Q47363112 | Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast |
| Q37033446 | Metabolic network model of a human oral pathogen. |
| Q38032459 | Metabolome 2.0: quantitative genetics and network biology of metabolic phenotypes |
| Q37286414 | Metabolomics Analysis of the Larval Head of the Silkworm, Bombyx mori |
| Q34986572 | Minimal metabolic pathway structure is consistent with associated biomolecular interactions |
| Q55020721 | Mining of potential drug targets through the identification of essential and analogous enzymes in the genomes of pathogens of Glycine max, Zea mays and Solanum lycopersicum. |
| Q24791425 | Model-independent fluxome profiling from 2H and 13C experiments for metabolic variant discrimination |
| Q36343560 | Modelling strategies for the industrial exploitation of lactic acid bacteria |
| Q26849400 | Multi -omics and metabolic modelling pipelines: challenges and tools for systems microbiology |
| Q34632986 | Neisseria meningitidis: biology, microbiology, and epidemiology. |
| Q28212164 | Network-based analysis of metabolic regulation in the human red blood cell |
| Q37038558 | Network-based approaches for linking metabolism with environment |
| Q33236264 | Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition |
| Q38606272 | Observing metabolic functions at the genome scale |
| Q55098387 | On an algorithmic definition for the components of the minimal cell. |
| Q51023424 | On dynamically generating relevant elementary flux modes in a metabolic network using optimization |
| Q36539130 | On the way to understand biological complexity in plants: S-nutrition as a case study for systems biology |
| Q51637852 | Pathway knockout and redundancy in metabolic networks |
| Q28471830 | Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API |
| Q34576205 | Physicochemical modelling of cell signalling pathways. |
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| Q37884605 | Prospects for the Future Using Genomics and Proteomics in Clinical Microbiology |
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| Q28769658 | Regulatory on/off minimization of metabolic flux changes after genetic perturbations |
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| Q55053302 | SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases. |
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