Extreme pathway lengths and reaction participation in genome-scale metabolic networks

scientific article

Extreme pathway lengths and reaction participation in genome-scale metabolic networks is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1101/GR.327702
P3181OpenCitations bibliographic resource ID2747932
P932PMC publication ID187577
P698PubMed publication ID12466293
P5875ResearchGate publication ID7027012

P50authorBernhard PalssonQ4894212
Jason A. PapinQ37369558
Nathan D PriceQ73223218
P2860cites workA general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.Q33543834
Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.Q33651317
Metabolic modeling of microbial strains in silico.Q34179356
Global properties of the metabolic map of Escherichia coliQ35027310
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis.Q35784412
Genome-scale metabolic model of Helicobacter pylori 26695.Q39679903
Systems properties of the Haemophilus influenzae Rd metabolic genotypeQ41671443
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspectiveQ41724911
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysisQ41724916
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy.Q44019204
METATOOL: for studying metabolic networks.Q52216547
Computer-aided synthesis of biochemical pathwaysQ52465888
Pathway analysis, engineering, and physiological considerations for redirecting central metabolism.Q54579293
Integrated pathway–genome databases and their role in drug discoveryQ60309513
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectmetabolic networkQ2263094
P304page(s)1889-1900
P577publication date2002-12-01
P1433published inGenome ResearchQ5533485
P1476titleExtreme pathway lengths and reaction participation in genome-scale metabolic networks
P478volume12

Reverse relations

cites work (P2860)
Q37147567A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
Q33281717A network perspective on the topological importance of enzymes and their phylogenetic conservation
Q51897409Algebraic method for the analysis of signaling crosstalk.
Q34180306Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices
Q36450015Analyzing Thiol-Dependent Redox Networks in the Presence of Methylene Blue and Other Antimalarial Agents with RT-PCR-Supported in silico Modeling
Q36108112Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism.
Q29031028Applications of genome-scale metabolic reconstructions
Q27000096Basic concepts and principles of stoichiometric modeling of metabolic networks
Q39776363Bayesian flux balance analysis applied to a skeletal muscle metabolic model.
Q24816749Bioinformatics in microbial biotechnology--a mini review
Q33840569Comparison on extreme pathways reveals nature of different biological processes
Q24803776Computation of elementary modes: a unifying framework and the new binary approach
Q37977830Computational tools for the synthetic design of biochemical pathways
Q94102853Current Awareness on Comparative and Functional Genomics
Q38053353Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways
Q37328003Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism
Q33299957Environmental variability and modularity of bacterial metabolic networks
Q34001801Environmental versatility promotes modularity in genome-scale metabolic networks
Q61799466Extreme pathway analysis reveals the organizing rules of metabolic regulation
Q54378287Flux coupling analysis of metabolic networks is sensitive to missing reactions
Q47878737Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks.
Q39968205Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.
Q38314194Genome-scale modeling for metabolic engineering.
Q29616789Genome-scale models of microbial cells: evaluating the consequences of constraints
Q59336719Improving the EFMs quality by augmenting their representativeness in LP methods
Q36177644In silico metabolic network analysis of Arabidopsis leaves
Q33352557Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways
Q42588755Information processing by biochemical networks: a dynamic approach
Q35596545Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models
Q34534218Low degree metabolites explain essential reactions and enhance modularity in biological networks.
Q28469032Matrix formalism to describe functional states of transcriptional regulatory systems
Q38056722Mechanistic modeling of aberrant energy metabolism in human disease
Q92188484Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions
Q84597241Metabolic Networks and Their Evolution
Q64252658Metabolic Pathway Analysis of Nitrogen and Phosphorus Uptake by the Consortium between and
Q51079660Metabolic engineering of Mannheimia succiniciproducens for succinic acid production based on elementary mode analysis with clustering
Q35135595Metabolic pathways in the post-genome era.
Q41889714Minimal cut sets and the use of failure modes in metabolic networks.
Q30433804Modeling cardiac β-adrenergic signaling with normalized-Hill differential equations: comparison with a biochemical model
Q101452071NetRed, an algorithm to reduce genome-scale metabolic networks and facilitate the analysis of flux predictions
Q50502346Network reduction in metabolic pathway analysis: elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii
Q28212164Network-based analysis of metabolic regulation in the human red blood cell
Q33236264Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition
Q41833487Pathway analysis of liver metabolism under stressed condition
Q51637852Pathway knockout and redundancy in metabolic networks
Q38525312Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies.
Q30939059Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
Q37077624Role of bioinformatics in the development of new antibacterial therapy
Q28474052Spontaneous reaction silencing in metabolic optimization
Q44980470Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae
Q28537786Structural control of metabolic flux
Q46908031Study of metabolic network of Cupriavidus necator DSM 545 growing on glycerol by applying elementary flux modes and yield space analysis
Q40288125The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis
Q34352367The geometry of the flux cone of a metabolic network
Q33417875Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks
Q37780305Tracer-based metabolomics: concepts and practices
Q28750523Trends in modeling Biomedical Complex Systems
Q80833903Two-dimensional annotation of genomes
Q34187246Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.
Q37751917Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators.
Q27499049sybil – Efficient constraint-based modelling in R

Search more.