Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis

scientific article published on April 2000

Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1006/JTBI.2000.1088
P698PubMed publication ID10716908

P2093author name stringPalsson BO
Schilling CH
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectHaemophilus influenzaeQ1141979
P1104number of pages35
P304page(s)249-283
P577publication date2000-04-01
P1433published inJournal of Theoretical BiologyQ2153724
P1476titleAssessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis
P478volume203

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cites work (P2860)
Q37147567A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
Q27014752A metabolic network approach for the identification and prioritization of antimicrobial drug targets
Q33916096A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness
Q31090599A principal components method constrained by elementary flux modes: analysis of flux data sets.
Q35178614Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
Q51897409Algebraic method for the analysis of signaling crosstalk.
Q33747798An incomplete TCA cycle increases survival of Salmonella Typhimurium during infection of resting and activated murine macrophages
Q42128537Analysis of Genome-scale Expression Network in Four Major Bacterial Residents of Cystic Fibrosis Lung
Q34180306Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices
Q41791571Analysis of metabolic subnetworks by flux cone projection.
Q28213254Analysis of optimality in natural and perturbed metabolic networks
Q29031028Applications of genome-scale metabolic reconstructions
Q37971381Applications of system-level models of metabolism for analysis of bacterial physiology and identification of new drug targets
Q36982025Bacterial genome sequencing and its use in infectious diseases
Q39776363Bayesian flux balance analysis applied to a skeletal muscle metabolic model.
Q34612133Comparative genome analysis and pathway reconstruction
Q47593538Comparison of different approaches for identifying subnetworks in metabolic networks
Q33840569Comparison on extreme pathways reveals nature of different biological processes
Q33641931Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition
Q38266034Computational approaches to metabolic engineering utilizing systems biology and synthetic biology
Q34640884Computing minimal nutrient sets from metabolic networks via linear constraint solving
Q34257056Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
Q73302704Current awareness on comparative and functional genomics
Q48326559Detection of stoichiometric inconsistencies in biomolecular models
Q35784412Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis.
Q37328003Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism
Q33300475Estimation of the number of extreme pathways for metabolic networks
Q28472194Evolutionary plasticity and innovations in complex metabolic reaction networks
Q43786003Expa: a program for calculating extreme pathways in biochemical reaction networks
Q47288244Experimental design and metabolic flux analysis tools to optimize industrially relevant Haemophilus influenzae type b growth medium.
Q34178460Extreme pathway analysis of human red blood cell metabolism
Q24682088Extreme pathway lengths and reaction participation in genome-scale metabolic networks
Q92107297FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria
Q46236534Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism.
Q51247849Finding minimal generating set for metabolic network with reversible pathways
Q43740877Flux balance analysis of biological systems: applications and challenges.
Q40497938Flux coupling analysis of genome-scale metabolic network reconstructions.
Q47418924From Annotated Genomes to Metabolic Flux Models and Kinetic Parameter Fitting
Q28538178Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
Q33352068Functional genomics via metabolic footprinting: monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT-IR and direct injection electrospray mass spectrometry
Q42658345Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
Q39679903Genome-scale metabolic model of Helicobacter pylori 26695.
Q35101082Genome-scale microbial in silico models: the constraints-based approach.
Q33391538Genome-scale models of bacterial metabolism: reconstruction and applications
Q24794109Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation
Q91693204Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine
Q34660080In Silico Systems Biology Approaches for the Identification of Antimicrobial Targets
Q29618471In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
Q30659424In silico proteome-wide amino aCid and elemental composition (PACE) analysis of expression proteomics data provides a fingerprint of dominant metabolic processes.
Q35162038Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.
Q35596400It is all about metabolic fluxes
Q40328686Kinetic constraints for formation of steady states in biochemical networks
Q37849847Mathematical models of cell factories: moving towards the core of industrial biotechnology
Q27499682MetaMerge: scaling up genome-scale metabolic reconstructions, with application to Mycobacterium tuberculosis
Q43073354Metabolic analyses elucidate non-trivial gene targets for amplifying dihydroartemisinic acid production in yeast
Q37063035Metabolic flux analysis and metabolic engineering of microorganisms
Q28749142Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli
Q38732747Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate
Q34179356Metabolic modeling of microbial strains in silico.
Q34631271Metabolic modelling of microbes: the flux-balance approach
Q37962486Metabolic network modeling and simulation for drug targeting and discovery
Q35194034Metabolic networks in motion: 13C-based flux analysis
Q35135595Metabolic pathways in the post-genome era.
Q37615152Metabolic versatility in Haemophilus influenzae: a metabolomic and genomic analysis
Q33235593Metabolite coupling in genome-scale metabolic networks
Q34457189Network dynamics and cell physiology
Q35015314Network genomics--a novel approach for the analysis of biological systems in the post-genomic era.
Q33236264Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition
Q46669644Neutralism and selectionism: a network-based reconciliation
Q45292349Optimization-driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks
Q34068514Parallelization of Nullspace Algorithm for the computation of metabolic pathways
Q34165160Perspectives for mass spectrometry and functional proteomics
Q34190592Porin OmpP2 of Haemophilus influenzae shows specificity for nicotinamide-derived nucleotide substrates
Q43226870Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production
Q37884605Prospects for the Future Using Genomics and Proteomics in Clinical Microbiology
Q28657907Proteomic analysis of carbon concentrating chemolithotrophic bacteria Serratia sp. for sequestration of carbon dioxide
Q89659479Quantitative Connection between Cell Size and Growth Rate by Phospholipid Metabolism
Q34409668Random sampling of elementary flux modes in large-scale metabolic networks
Q33321324Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis
Q33417923Reconstruction of metabolic pathways for the cattle genome
Q46796176Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism
Q85409730Relationship between extreme pathways and structurally minimal pathways
Q43937903Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism
Q38511807The modelling of a primitive ‘sustainable’ conservative cell
Q35109629Thirteen years of building constraint-based in silico models of Escherichia coli
Q36371202Towards multidimensional genome annotation
Q44132341Treatment of multifunctional enzymes in metabolic pathway analysis
Q35062587Two approaches for metabolic pathway analysis?
Q34187246Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies.
Q51571266Use of an Uncertainty Analysis for Genome-Scale Models as a Prediction Tool for Microbial Growth Processes in Subsurface Environments
Q35005792Using graph theory to analyze biological networks
Q33660953Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity.
Q37751917Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators.
Q33943518Whole-genome sequencing reveals novel insights into sulfur oxidation in the extremophile Acidithiobacillus thiooxidans.

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