Bacterial genome sequencing and its use in infectious diseases

scientific article published on November 2007

Bacterial genome sequencing and its use in infectious diseases is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/S1473-3099(07)70260-8
P698PubMed publication ID17961857
P5875ResearchGate publication ID5883762

P50authorDidier RaoultQ915676
Pierre-Édouard FournierQ21337923
Michel DrancourtQ59314790
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A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosisQ29617342
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approachQ29617547
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental dataQ29618471
Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease.Q30329522
Multispacer typing to study the genotypic distribution of Bartonella henselae populations.Q30355366
Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenesQ30885683
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial communityQ31009340
Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assayQ31032100
Genomic approach for analysis of surface proteins in Chlamydia pneumoniaeQ31032708
Genotyping of Mycobacterium leprae on the basis of the polymorphism of TTC repeats for analysis of leprosy transmissionQ31041634
Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensisQ31148694
Protein interaction mapping on a functional shotgun sequence of Rickettsia sibiricaQ33197916
Genotyping of Bacillus anthracis strains based on automated capillary 25-loci multiple locus variable-number tandem repeats analysisQ33239138
Identification of candidate antigen in Whipple's disease using a serological proteomic approachQ33241007
Determining the antibiotic resistance potential of the indigenous oral microbiota of humans using a metagenomic approachQ33241176
Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typingQ33241195
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogensQ33243561
A postgenomic approach to identification of Mycobacterium leprae-specific peptides as T-cell reagentsQ33592488
Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracisQ33603350
Multilocus variable-number tandem repeat typing of Mycobacterium ulceransQ33753358
Genome scale identification of Treponema pallidum antigensQ33883316
Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.Q33892877
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Comparison of Real-Time, Quantitative PCR with Molecular Beacons to Nested PCR and Culture Methods for Detection ofMycobacterium aviumsubsp.paratuberculosisin Bovine Fecal SamplesQ33946481
From microbial genome sequence to applicationsQ33949904
Genome-sequence-based fluorescent amplified-fragment length polymorphism analysis of Mycobacterium tuberculosis.Q33966011
Fluorescent amplified-fragment length polymorphism genotyping of Neisseria meningitidis identifies clones associated with invasive diseaseQ33970672
Multilocus sequence typing system for Campylobacter jejuni.Q33970764
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Use of a whole genome approach to identify vaccine molecules affording protection against Streptococcus pneumoniae infectionQ34006372
Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarraysQ74303433
Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria?Q74603775
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Detection of Neisseria Meningitidis in clinical samples by a duplex real-time PCR targeting the porA and ctrA genesQ38342723
Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity.Q38976676
Rickettsia africae, a tick-borne pathogen in travelers to sub-Saharan AfricaQ39384144
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Development of a genomics-based PCR assay for detection of Mycoplasma pneumoniae in a large outbreak in New York StateQ39464101
Genome Sequence-Based Fluorescent Amplified Fragment Length Polymorphism of Campylobacter jejuni , Its Relationship to Serotyping, and Its Implications for Epidemiological AnalysisQ39466785
Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniaeQ39519447
Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosisQ39664517
Genome-scale metabolic model of Helicobacter pylori 26695.Q39679903
Whole-genome sequence variation among multiple isolates of Pseudomonas aeruginosaQ39705951
Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arraysQ39734864
Genome-scale design of PCR primers and long oligomers for DNA microarraysQ39936117
Identification of two putative rickettsial adhesins by proteomic analysisQ40337996
Use of genome selected repeated sequences increases the sensitivity of PCR detection of Tropheryma whipplei.Q40470214
Multispacer typing technique for sequence-based typing of Bartonella quintanaQ40517737
Spotless rickettsiosis caused by Rickettsia slovaca and associated with Dermacentor ticksQ40583400
Transcriptome-based antigen identification for Neisseria meningitidisQ40676977
Previously unrecognized vaccine candidates against group B meningococcus identified by DNA microarraysQ40711453
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysisQ41724916
Computer-aided design of agents that inhibit the cep quorum-sensing system of Burkholderia cenocepaciaQ41813059
Multispacer typing of Rickettsia prowazekii enabling epidemiological studies of epidemic typhusQ42537037
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.Q42645426
Insight into age-related macular degeneration: new vision in sightQ43586539
Identification and molecular characterisation of CmeB, a Campylobacter jejuni multidrug efflux pumpQ43868806
Phylogeny of the Whipple's-disease-associated bacteriumQ43921100
Comparison of different decontamination methods for reagents to detect low concentrations of bacterial 16S DNA by real-time-PCR.Q44227195
Genomics-based design of defined growth media for the plant pathogen Xylella fastidiosaQ44320594
The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens.Q44586499
Mycobacterial interspersed repetitive units (MIRU) differentiate Mycobacterium avium subspecies paratuberculosis from other species of the Mycobacterium avium complexQ44759827
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applicationsQ45237418
Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome.Q45284162
Estimation of prokaryote genomic DNA G+C content by sequencing universally conserved genesQ45316351
Genomic diversity and evolution within the species Streptococcus agalactiaeQ46626837
Genome-based design of a cell-free culture medium for Tropheryma whippleiQ51834797
Development of Rickettsia prowazekii DNA vaccine: cloning strategiesQ52609269
Identification and characterization of a phospholipase D-superfamily gene in rickettsiae.Q54745787
Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalisQ57020069
Towards an immunodiagnostic test for leprosyQ57937497
Review of false-positive cultures for Mycobacterium tuberculosis and recommendations for avoiding unnecessary treatmentQ34092324
Selection of protective epitopes for Brucella melitensis by DNA vaccinationQ34111670
Metabolic modeling of microbial strains in silico.Q34179356
Genomics-based identification of targets in pathogenic bacteria for potential therapeutic and diagnostic use.Q34179576
Multilocus sequence typing scheme for Enterococcus faecium.Q34196794
Identification of novel Mycobacterium tuberculosis antigens with potential as diagnostic reagents or subunit vaccine candidates by comparative genomics.Q34257884
Search for potential vaccine candidate open reading frames in the Bacillus anthracis virulence plasmid pXO1: in silico and in vitro screeningQ34262140
Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomesQ34297810
Identification of a universal Group B streptococcus vaccine by multiple genome screenQ34313096
From genome to vaccine: in silico predictions, ex vivo verification.Q34324993
Cultivating the unculturedQ34388876
Genome scale comparison of Mycobacterium avium subsp. paratuberculosis with Mycobacterium avium subsp. avium reveals potential diagnostic sequencesQ34455967
Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphismsQ34655405
Diagnosis of Bartonella endocarditis by a real-time nested PCR assay using serumQ34773678
Molecular evaluation of antibiotic susceptibility: Tropheryma whipplei paradigmQ34940257
Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolatesQ34950346
Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysisQ34988507
Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicityQ35089471
P433issue11
P407language of work or nameEnglishQ1860
P921main subjectinfectious diseaseQ18123741
P304page(s)711-723
P577publication date2007-11-01
P13046publication type of scholarly workreview articleQ7318358
P1433published inLancet Infectious DiseasesQ15724248
P1476titleBacterial genome sequencing and its use in infectious diseases
P478volume7

Reverse relations

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