RMBNToolbox: random models for biochemical networks

scientific article

RMBNToolbox: random models for biochemical networks is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcsb/AhoSNY07
P6179Dimensions Publication ID1046363351
P356DOI10.1186/1752-0509-1-22
P932PMC publication ID1896132
P698PubMed publication ID17524136
P5875ResearchGate publication ID6309000

P50authorOlli Yli-HarjaQ34581463
P2093author name stringTommi Aho
Olli-Pekka Smolander
Jari Niemi
P2860cites workAn expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)Q21194867
Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletionsQ21284379
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Modular decomposition of protein-protein interaction networksQ24797641
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Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli.Q54483559
SBMLToolbox: an SBML toolbox for MATLAB usersQ59720681
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3Q73707204
Identification and characterization of protein subcomplexes in yeastQ81653386
Transcriptional regulatory networks in Saccharomyces cerevisiaeQ27860846
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Global mapping of the yeast genetic interaction networkQ27934987
Systematic genetic analysis with ordered arrays of yeast deletion mutantsQ28131618
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsQ28212902
COPASI--a COmplex PAthway SImulatorQ29617467
Simulation of microarray data with realistic characteristics.Q31049043
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networksQ33235993
Metatool 5.0: fast and flexible elementary modes analysisQ33244990
Parameter estimation in biochemical pathways: a comparison of global optimization methodsQ33682039
Artificial gene networks for objective comparison of analysis algorithmsQ33973049
Metabolic modeling of microbial strains in silico.Q34179356
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domainsQ34329118
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systemsQ34348589
The MIPS mammalian protein-protein interaction databaseQ34365947
Random Boolean network models and the yeast transcriptional networkQ34385495
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimationQ34490423
Metabolic pathways in the post-genome era.Q35135595
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic modelQ35574107
The TRANSPATH signal transduction database: a knowledge base on signal transduction networksQ38455690
OptStrain: a computational framework for redesign of microbial production systems.Q40299930
Simulation tools for biochemical networks: evaluation of performance and usabilityQ40484045
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Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspectiveQ41724911
Genome-scale analysis of Streptomyces coelicolor A3(2) metabolismQ42658345
Metabolic pathway analysis of a recombinant yeast for rational strain developmentQ44062430
A multi-algorithm, multi-timescale method for cell simulationQ48024431
An improved algorithm for stoichiometric network analysis: theory and applicationsQ48513824
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P304page(s)22
P577publication date2007-05-24
P13046publication type of scholarly workreview articleQ7318358
P1433published inBMC Systems BiologyQ4835949
P1476titleRMBNToolbox: random models for biochemical networks
P478volume1

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cites work (P2860)
Q41511932Assessing and Resolving Model Misspecifications in Metabolic Flux Analysis
Q37070273Understanding biological functions through molecular networks

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