Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions.

scientific article

Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PGEN.1003994
P932PMC publication ID3868540
P698PubMed publication ID24367273
P5875ResearchGate publication ID259456970

P50authorRabih MurrQ59551028
Dirk SchübelerQ62560436
Robert IvánekQ63681463
Lukas BurgerQ93195482
Dimos GaidatzisQ114782770
P2093author name stringAngelika Feldmann
P2860cites workTissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediatesQ21089989
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genomeQ21092478
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brainQ22065852
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1Q24316558
DNA demethylation dynamicsQ24629227
Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancersQ24630926
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNAQ24632387
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcriptionQ24645118
Generation of germline-competent induced pluripotent stem cellsQ28131699
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 geneQ28145754
Histone modifications at human enhancers reflect global cell-type-specific gene expressionQ28238467
CpG islands and the regulation of transcriptionQ28315762
Promotion of reprogramming to ground state pluripotency by signal inhibitionQ28473911
Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cellsQ28478707
Transgenic RNAi reveals essential function for CTCF in H19 gene imprintingQ28590627
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelityQ28595004
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineagesQ28728805
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencingQ28749183
Functions of DNA methylation: islands, start sites, gene bodies and beyondQ29547260
A unique chromatin signature uncovers early developmental enhancers in humansQ29614327
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiationQ29617398
Identification of active regulatory regions from DNA methylation dataQ30653512
Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domainQ31022249
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissuesQ33893082
Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosineQ33922491
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targetingQ34033556
Methylation-dependent and -independent genomic targeting principles of the MBD protein family.Q51071218
CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.Q53149204
Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cellsQ58047136
Molecular biology. Epigenetic islands in a genetic oceanQ85399830
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolutionQ34239260
Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1.Q34574880
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cellsQ35071448
DNA methylation status predicts cell type-specific enhancer activity.Q35176962
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cellsQ35557702
Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genomeQ35932331
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNAQ36021714
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talkQ36021752
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartmentQ36142013
Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancersQ36280667
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.Q36517044
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.Q36659158
Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq methodQ36769466
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic primingQ36853522
CTCF regulates cell cycle progression of alphabeta T cells in the thymusQ36967236
Charting a dynamic DNA methylation landscape of the human genomeQ37292011
Functional analysis of CTCF during mammalian limb developmentQ38338813
Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genesQ39439009
Oct4 links multiple epigenetic pathways to the pluripotency networkQ40200394
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cellsQ40212715
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.Q40680118
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryosQ41936512
DNA-binding factors shape the mouse methylome at distal regulatory regionsQ42818364
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.Q43121080
Methylated DNA immunoprecipitation (MeDIP).Q46261717
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivativesQ48151931
CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neuronsQ48421628
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P921main subjectDNA methylationQ874745
P304page(s)e1003994
P577publication date2013-12-19
P1433published inPLOS GeneticsQ1893441
P1476titleTranscription factor occupancy can mediate active turnover of DNA methylation at regulatory regions
P478volume9

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