A novel cofactor-binding mode in bacterial IMP dehydrogenases explains inhibitor selectivity

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A novel cofactor-binding mode in bacterial IMP dehydrogenases explains inhibitor selectivity is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/JBC.M114.619767
P932PMC publication ID4342496
P698PubMed publication ID25572472
P5875ResearchGate publication ID270660832

P50authorMagdalena Makowska-GrzyskaQ47546863
Jerzy OsipiukQ114783297
Andrzej JoachimiakQ28028611
P2093author name stringYoungchang Kim
Natalia Maltseva
Lizbeth Hedstrom
Magdalena Makowska-Grzyska
Minjia Zhang
Suresh Kumar Gorla
Deviprasad R Gollapalli
Minyi Gu
Kavitha Mandapati
P2860cites workCofactor mobility determines reaction outcome in the IMPDH and GMPR (β-α)8 barrel enzymesQ24294954
IMP dehydrogenase: structure, mechanism, and inhibitionQ24642299
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Identification of novel Mt-Guab2 inhibitor series active against M. tuberculosisQ27306024
Crystal structure of human type II inosine monophosphate dehydrogenase: implications for ligand binding and drug designQ27617777
Characteristics and crystal structure of bacterial inosine-5'-monophosphate dehydrogenaseQ27617878
Crystal structure of a ternary complex of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase: NAD+ orients the active site loop for catalysisQ27639884
Phthalazinone inhibitors of inosine-5'-monophosphate dehydrogenase from Cryptosporidium parvum.Q36570032
Targeting a prokaryotic protein in a eukaryotic pathogen: identification of lead compounds against cryptosporidiosisQ36740182
Selective and potent urea inhibitors of cryptosporidium parvum inosine 5'-monophosphate dehydrogenaseQ36791988
The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results.Q37015481
Allosteric activation via kinetic control: potassium accelerates a conformational change in IMP dehydrogenaseQ38618632
Unusual conformation of nicotinamide adenine dinucleotide (NAD) bound to diphtheria toxin: a comparison with NAD bound to the oxidoreductase enzymesQ42167298
Asp338 controls hydride transfer in Escherichia coli IMP dehydrogenaseQ43505933
Pharmacophore binding motifs for nicotinamide adenine dinucleotide analogues across multiple protein families: a detailed contact-based analysis of the interaction between proteins and NAD(P) cofactorsQ47928265
Linking distinct conformations of nicotinamide adenine dinucleotide with protein fold/function.Q53245439
Integration of PCR fragments at any specific site within cloning vectors without the use of restriction enzymes and DNA ligaseQ74238681
PURINE N-OXIDES. XII. PHOTOCHEMICAL CHANGES INDUCED BY ULTRAVIOLET RADIATIONQ76969429
Differential signatures of bacterial and mammalian IMP dehydrogenase enzymesQ77950759
Cofactor-type inhibitors of inosine monophosphate dehydrogenase via modular approach: targeting the pyrophosphate binding sub-domainQ83419394
The immunosuppressive agent mizoribine monophosphate forms a transition state analogue complex with inosine monophosphate dehydrogenaseQ27640361
Crystal structures of Tritrichomonasfoetus inosine monophosphate dehydrogenase in complex with substrate, cofactor and analogs: a structural basis for the random-in ordered-out kinetic mechanismQ27640406
The Structural Basis of Cryptosporidium-Specific IMP Dehydrogenase Inhibitor SelectivityQ27658866
Bacillus anthracis Inosine 5′-Monophosphate Dehydrogenase in Action: The First Bacterial Series of Structures of Phosphate Ion-, Substrate-, and Product-Bound ComplexesQ27670715
Structure of Apo- and Monometalated Forms of NDM-1—A Highly Potent Carbapenem-Hydrolyzing Metallo-β-LactamaseQ27674309
Structure ofPseudomonas aeruginosainosine 5′-monophosphate dehydrogenaseQ27676976
Optimization of Benzoxazole-Based Inhibitors of Cryptosporidium parvum Inosine 5′-Monophosphate DehydrogenaseQ27678115
Structure and mechanism of inosine monophosphate dehydrogenase in complex with the immunosuppressant mycophenolic acidQ27733135
Use of TLS parameters to model anisotropic displacements in macromolecular refinementQ27860499
HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutesQ27860502
Coot: model-building tools for molecular graphicsQ27860505
Overview of the CCP4 suite and current developmentsQ27860782
Multiple sequence alignment with hierarchical clusteringQ27860956
Refinement of macromolecular structures by the maximum-likelihood methodQ27861011
The TIM-barrel fold: a versatile framework for efficient enzymesQ28205462
A screening pipeline for antiparasitic agents targeting cryptosporidium inosine monophosphate dehydrogenaseQ28475058
Triazole-linked inhibitors of inosine monophosphate dehydrogenase from human and Mycobacterium tuberculosisQ28486568
Antibiotics for emerging pathogensQ29615377
Deciphering key features in protein structures with the new ENDscript serverQ29617219
Biochemical analysis of the modular enzyme inosine 5'-monophosphate dehydrogenaseQ30175322
The antibiotic potential of prokaryotic IMP dehydrogenase inhibitorsQ30356398
Repurposing cryptosporidium inosine 5'-monophosphate dehydrogenase inhibitors as potential antibacterial agents.Q30371392
High-throughput protein purification and quality assessment for crystallizationQ30406950
Structural determinants of inhibitor selectivity in prokaryotic IMP dehydrogenasesQ30430133
Triazole inhibitors of Cryptosporidium parvum inosine 5'-monophosphate dehydrogenaseQ33604996
The structure of a domain common to archaebacteria and the homocystinuria disease proteinQ34415436
Structure-activity relationship study of selective benzimidazole-based inhibitors of Cryptosporidium parvum IMPDH.Q35787804
The CBS subdomain of inosine 5'-monophosphate dehydrogenase regulates purine nucleotide turnoverQ36517922
P433issue9
P407language of work or nameEnglishQ1860
P304page(s)5893-5911
P577publication date2015-01-08
P1433published inJournal of Biological ChemistryQ867727
P1476titleA novel cofactor-binding mode in bacterial IMP dehydrogenases explains inhibitor selectivity
P478volume290

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cites work (P2860)
Q41966229A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.
Q40121791Benzoxazoles, phthalazinones, and arylurea-based compounds with IMPDH-independent antibacterial activity against Francisella tularensis.
Q36350988Biochemical and structural analysis of an Eis family aminoglycoside acetyltransferase from bacillus anthracis
Q27702049Crystallographic studies of two variants of Pseudomonas aeruginosa IMPDH with impaired allosteric regulation
Q38573837Discovery of a new method for potent drug development using power function of stoichiometry of homomeric biocomplexes or biological nanomotors
Q53684814Expanding benzoxazole based inosine 5'-monophosphate dehydrogenase (IMPDH) inhibitor structure-activity as potential anti-tuberculosis agents.
Q36320750Guanine nucleotide binding to the Bateman domain mediates the allosteric inhibition of eukaryotic IMP dehydrogenases
Q90157701Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis
Q41105047Inhibition of Inosine-5'-monophosphate Dehydrogenase from Bacillus anthracis: Mechanism Revealed by Pre-Steady-State Kinetics
Q38558374Inosine 5'-monophosphate dehydrogenase inhibitors as antimicrobial agents: recent progress and future perspectives.
Q28550069Mycobacterium tuberculosis IMPDH in Complexes with Substrates, Products and Antitubercular Compounds
Q35592527Structure of Cryptosporidium IMP dehydrogenase bound to an inhibitor with in vivo antiparasitic activity
Q27728459The Inosine Monophosphate Dehydrogenase, GuaB2, Is a Vulnerable New Bactericidal Drug Target for Tuberculosis
Q36934054The cystathionine-β-synthase domains on the guanosine 5''-monophosphate reductase and inosine 5'-monophosphate dehydrogenase enzymes from Leishmania regulate enzymatic activity in response to guanylate and adenylate nucleotide levels
Q90914855Unpacking the Pathogen Box-An Open Source Tool for Fighting Neglected Tropical Disease

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