Acid-adapted strains of Escherichia coli K-12 obtained by experimental evolution

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Acid-adapted strains of Escherichia coli K-12 obtained by experimental evolution is …
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scholarly articleQ13442814

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P356DOI10.1128/AEM.03494-14
P932PMC publication ID4345379
P698PubMed publication ID25556191
P5875ResearchGate publication ID270454440

P50authorKeith A MartinezQ83684427
Kaitlin E CreamerQ87785256
P2093author name stringSean P Bush
Amanda He
Issam Hamdallah
Joan L Slonczewski
Mark M Harden
Michelle W Clark
Robert L Kresslein
P2860cites workMicrobial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptationQ22122024
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collectionQ22122301
A human gut microbial gene catalogue established by metagenomic sequencingQ24618931
Genomic analysis of a key innovation in an experimental Escherichia coli populationQ24632912
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110Q24672423
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolutionQ27638951
Escherichia coli intracellular pH, membrane potential, and cell growthQ39968207
Regulation of aerobic and anaerobic D-malate metabolism of Escherichia coli by the LysR-type regulator DmlR (YeaT)Q40333174
RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicasesQ41895178
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.Q42619151
Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coliQ42634341
Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coliQ43065961
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environmentsQ43230376
Regulation of tartrate metabolism by TtdR and relation to the DcuS-DcuR-regulated C4-dicarboxylate metabolism of Escherichia coliQ43297256
ATPase activity of the MsbA lipid flippase of Escherichia coliQ44065009
A New Class of Bacterial RNA Polymerase Inhibitor Affects Nucleotide AdditionQ44630499
Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coliQ45075981
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescaleQ46069507
Disruption of Escherichia coli hepA, an RNA polymerase-associated protein, causes UV sensitivityQ48010373
Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulatorsQ48074225
Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage systemQ48102976
Interplay between intestinal pH, transit time and feed status on the in vivo performance of pH responsive ileo-colonic release systems.Q51448432
Pasteurization of fruit juices of different pH values by combined high hydrostatic pressure and carbon dioxide.Q54326240
Antigen 43, a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12.Q54568586
Regulation of lysine decarboxylase activity in Escherichia coli K-12.Q54735897
Membrane cyclopropane fatty acid content is a major factor in acid resistance of Escherichia coliQ78016755
Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid ApproachQ27664611
Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymeraseQ27733702
Statistical methods for detecting molecular adaptationQ28140163
Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemiaQ28298138
Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.Q33259655
Rapid acid treatment of Escherichia coli: transcriptomic response and recoveryQ33321349
pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12.Q33554062
Genomics of rapid adaptation to antibiotics: convergent evolution and scalable sequence amplificationQ33836661
A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coliQ33889384
Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediolQ33963271
Breaking through the acid barrier: an orchestrated response to proton stress by enteric bacteriaQ34299106
Characterization of the Escherichia coli gcv operonQ34341073
The Human Microbiome Project: a community resource for the healthy human microbiomeQ34384120
Measurement of gastrointestinal pH profiles in normal ambulant human subjectsQ34530993
Genetic architecture of thermal adaptation in Escherichia coliQ34614487
Escherichia coli K-12 survives anaerobic exposure at pH 2 without RpoS, Gad, or hydrogenases, but shows sensitivity to autoclaved broth products.Q34631643
Regulation and function of Ag43 (flu).Q34825522
Structure and function of RapA: a bacterial Swi2/Snf2 protein required for RNA polymerase recycling in transcriptionQ35124151
Microbial laboratory evolution in the era of genome-scale scienceQ35176401
Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coliQ35590338
Molecular aspects of bacterial pH sensing and homeostasisQ35638988
Escherichia coli acid resistance: tales of an amateur acidophileQ35923268
pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetryQ35949254
Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pHQ36109829
Proteins induced by anaerobiosis in Escherichia coliQ36327219
pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate.Q36374847
The gene locus of the proton-translocating NADH: ubiquinone oxidoreductase in Escherichia coli. Organization of the 14 genes and relationship between the derived proteins and subunits of mitochondrial complex I.Q36697139
L-glutamine provides acid resistance for Escherichia coli through enzymatic release of ammoniaQ36810411
Cytoplasmic pH measurement and homeostasis in bacteria and archaeaQ37539166
New insights into bacterial adaptation through in vivo and in silico experimental evolutionQ37997288
Mechanisms of acid resistance in Escherichia coliQ38108828
Adaptive laboratory evolution -- principles and applications for biotechnologyQ38118393
Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysineQ39842792
Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH.Q39933772
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coli K-12Q21399437
P304page(s)1932-1941
P577publication date2015-01-02
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleAcid-adapted strains of Escherichia coli K-12 obtained by experimental evolution
P478volume81