The use of analytical sedimentation velocity to extract thermodynamic linkage

scientific article

The use of analytical sedimentation velocity to extract thermodynamic linkage is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.BPC.2011.05.014
P932PMC publication ID3166974
P698PubMed publication ID21703752
P5875ResearchGate publication ID51248390

P2093author name stringJames L Cole
Walter F Stafford
John J Correia
P2860cites workMacromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequencesQ24644640
Modern analytical ultracentrifugation in protein science: a tutorial reviewQ24645050
Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5Q27652424
Structure of a complex of the ATPase SecA and the protein-translocation channelQ27652526
Semi-rigid solution structures of heparin by constrained X-ray scattering modelling: new insight into heparin-protein complexesQ27658090
Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation ModelingQ27860847
Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solventsQ28359584
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugationQ29616488
Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniquesQ30447247
Analysis of weight average sedimentation velocity dataQ30604327
Signal peptides are allosteric activators of the protein translocaseQ33662560
Modern applications of analytical ultracentrifugationQ33689917
Analysis of PKR activation using analytical ultracentrifugationQ34079750
The modulation of transthyretin tetramer stability by cysteine 10 adducts and the drug diflunisal. Direct analysis by fluorescence-detected analytical ultracentrifugationQ34759704
Energetics of SecA dimerizationQ34761920
E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domainQ34769240
Nucleotide binding induces changes in the oligomeric state and conformation of Sec A in a lipid environment: a small-angle neutron-scattering studyQ34909320
Probing the affinity of SecA for signal peptide in different environmentsQ34979875
Heparin activates PKR by inducing dimerizationQ35706998
Selective photoaffinity labeling identifies the signal peptide binding domain on SecAQ35750297
Paradoxical interactions between human delta hepatitis agent RNA and the cellular protein kinase PKRQ35866566
Weak self-association in a carbohydrate systemQ35878618
The double-stranded-RNA-binding motif: interference and much moreQ35968493
Protein translocation by the Sec61/SecY channelQ36280355
THERMODYNAMIC POTENTIALS OF SYMMETRICAL ELECTROLYTES.Q36404425
Interferon action and the double-stranded RNA-dependent enzymes ADAR1 adenosine deaminase and PKR protein kinaseQ36557550
The surprising complexity of signal sequencesQ36571413
Analytical ultracentrifugation for the study of protein association and assemblyQ36578705
Oligomeric states of the SecA and SecYEG core components of the bacterial Sec transloconQ36608490
The double-stranded RNA-dependent protein kinase is also activated by heparinQ69397069
Energetics of vinca alkaloid interactions with tubulinQ74178203
Protein-protein and ligand-protein interactions studied by analytical ultracentrifugationQ83210999
The thermodynamics of vinca alkaloid-induced tubulin spirals formationQ83937049
Complex behavior in solution of homodimeric SecA.Q36639172
Activation of PKR: an open and shut case?Q36695833
Mechanism of PKR Activation by dsRNA.Q36943661
Bacterial protein secretion through the translocase nanomachineQ36972407
Protein translocation across the bacterial cytoplasmic membrane.Q37031528
Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibriumQ37264240
Viral evasion and subversion of pattern-recognition receptor signallingQ37319381
RNA dimerization promotes PKR dimerization and activationQ37389973
The ATPase cycle of the mitotic motor CENP-E.Q37432167
Effect of kinetics on sedimentation velocity profiles and the role of intermediatesQ37629275
Identification of the heparin-binding domains of the interferon-induced protein kinase, PKRQ37672476
SecA: a tale of two protomersQ37742750
Analysis of tubulin oligomers by analytical ultracentrifugationQ37751201
Insight into protein-protein interactions from analytical ultracentrifugationQ37775643
Ultra-weak reversible protein-protein interactionsQ37845484
Role of the amino-terminal residues of the interferon-induced protein kinase in its activation by double-stranded RNA and heparinQ38306294
Dissociation of the dimeric SecA ATPase during protein translocation across the bacterial membraneQ39647998
A therapeutic antibody and its antigen form different complexes in serum than in phosphate-buffered saline: a study by analytical ultracentrifugationQ39872323
The molecular chaperone SecB is released from the carboxy-terminus of SecA during initiation of precursor protein translocation.Q41006640
Kinetic partitioning between alternative protein-protein interactions controls a transcriptional switchQ41825978
The concentration-dependence of macromolecular parametersQ41971526
Magnesium-dependent interaction of PKR with adenovirus VAI.Q42128194
Direct identification of the site of binding on the chaperone SecB for the amino terminus of the translocon motor SecA.Q42739776
NUTS and BOLTS: applications of fluorescence-detected sedimentationQ43115502
A role for the two-helix finger of the SecA ATPase in protein translocation.Q43181763
The biotin repressor: thermodynamic coupling of corepressor binding, protein assembly, and sequence-specific DNA bindingQ44228081
Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP.Q44852933
Mutational analysis of the energetics of the GrpE.DnaK binding interface: equilibrium association constants by sedimentation velocity analytical ultracentrifugationQ44890778
Mechanism of PKR activation: dimerization and kinase activation in the absence of double-stranded RNA.Q45164974
Interaction of vinblastine with calf brain tubulin: effects of magnesium ionsQ45287833
Macromolecular interaction of halichondrin B analogues eribulin (E7389) and ER-076349 with tubulin by analytical ultracentrifugation.Q45935600
Detection of protein aggregates by sedimentation velocity analytical ultracentrifugation (SV-AUC): sources of variability and their relative importanceQ46171269
Structural and biophysical characterization of the 40 kDa PEG-interferon-alpha2a and its individual positional isomersQ46494538
Analysis of the function of Spire in actin assembly and its synergy with formin and profilinQ46879547
Effects of efavirenz binding on the subunit equilibria of HIV-1 reverse transcriptaseQ46964863
Analysis of heterologous interacting systems by sedimentation velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constantsQ47884569
Interaction of vinblastine with calf brain tubulin: multiple equilibriaQ48289034
Improved methods for fitting sedimentation coefficient distributions derived by time-derivative techniques.Q51940791
Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profileQ52420901
Calcium-induced dimerization of troponin-C.Q52725148
Thermodynamic linkage between tubulin self-association and the binding of vinblastine.Q52763219
Stoichiometry of the vinblastine-induced self-association of calf brain tubulin.Q52763225
Velocity sedimentation study of ligand-induced protein self-association.Q53765269
Phospholipid-induced monomerization and signal-peptide-induced oligomerization of SecA.Q54535975
P433issue1
P304page(s)120-128
P577publication date2011-05-27
P1433published inBiophysical ChemistryQ15760978
P1476titleThe use of analytical sedimentation velocity to extract thermodynamic linkage
P478volume159

Reverse relations

cites work (P2860)
Q39055569(S)Pinning down protein interactions by NMR.
Q28544960Analysis of antibody aggregate content at extremely high concentrations using sedimentation velocity with a novel interference optics
Q92270792Binary Colloidal Nanoparticles with a Large Size Ratio in Analytical Ultracentrifugation
Q88150617Determination of Interaction Parameters for Reversibly Self-Associating Antibodies: A Comparative Analysis
Q90692927Molecular Interaction Characterization Strategies for the Development of New Biotherapeutic Antibody Modalities
Q89849097New technologies to analyse protein function: an intrinsic disorder perspective
Q38098433Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches
Q92192845Proteomics and Non-proteomics Approaches to Study Stable and Transient Protein-Protein Interactions
Q36219330Thermodynamic Interrogation of the Assembly of a Viral Genome Packaging Motor Complex.
Q46523852Trimerization Dictates Solution Opalescence of a Monoclonal Antibody
Q52594676Weak IgG self- and hetero-association characterized by fluorescence analytical ultracentrifugation.

Search more.