HIV-1 Subtype C Phylodynamics in the Global Epidemic

scientific article

HIV-1 Subtype C Phylodynamics in the Global Epidemic is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3390/V2010033
P932PMC publication ID3185553
P698PubMed publication ID21994599
P5875ResearchGate publication ID51711930

P50authorMax EssexQ6794729
Vlad NovitskyQ117265914
P2093author name stringRui Wang
Stephen Lagakos
P2860cites workIsolation by Distance in Equilibrium and Non-Equilibrium PopulationsQ55966946
Timing of the Introduction into Ethiopia of Subcluster C′ of HIV Type 1 Subtype CQ56935634
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CD8+ T-cell responses to different HIV proteins have discordant associations with viral loadQ57259602
Differential Immunogenicity of HIV‐1 Clade C Proteins in Eliciting CD8+and CD4+Cell ResponsesQ57259616
Presence of HIV-1 Gag-specific IFN-gamma+IL-2+ and CD28+IL-2+ CD4 T cell responses is associated with nonprogression in HIV-1 infectionQ78551235
HIV Gag p24 specific responses secreting IFN-gamma and/or IL-2 in treatment-naïve individuals in acute infection early disease (AIED) are associated with low viral loadQ83169536
Relaxed phylogenetics and dating with confidenceQ21146068
The emergence of HIV/AIDS in the Americas and beyondQ22248090
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Estimation of levels of gene flow from DNA sequence dataQ24532834
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
jModelTest: phylogenetic model averagingQ27860610
BEAST: Bayesian evolutionary analysis by sampling treesQ27860723
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
Timing the ancestor of the HIV-1 pandemic strainsQ28137904
Application of phylogenetic networks in evolutionary studiesQ28276801
Not so different after all: a comparison of methods for detecting amino acid sites under selectionQ28306719
Bayesian coalescent inference of past population dynamics from molecular sequencesQ28306728
HyPhy: hypothesis testing using phylogeniesQ29013475
Bayesian selection of continuous-time Markov chain evolutionary modelsQ29615127
AIDS as a zoonosis: scientific and public health implicationsQ29617393
SplitsTree: analyzing and visualizing evolutionary dataQ29617896
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infectionQ29619510
Viral evolution and escape during primary human immunodeficiency virus-1 infection: implications for vaccine design.Q30376218
Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loadsQ33313878
Host HLA B*allele-associated multi-clade Gag T-cell recognition correlates with slow HIV-1 disease progression in antiretroviral therapy-naïve UgandansQ33399724
Analysis of total human immunodeficiency virus (HIV)-specific CD4(+) and CD8(+) T-cell responses: relationship to viral load in untreated HIV infectionQ33869806
Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolutionQ34092644
Magnitude of functional CD8+ T-cell responses to the gag protein of human immunodeficiency virus type 1 correlates inversely with viral load in plasmaQ34332166
Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design?Q34364357
Relative dominance of Gag p24-specific cytotoxic T lymphocytes is associated with human immunodeficiency virus controlQ34435052
Association between virus-specific T-cell responses and plasma viral load in human immunodeficiency virus type 1 subtype C infectionQ34465724
Adaptation of HIV-1 to human leukocyte antigen class IQ34604811
CD8 T-cell recognition of multiple epitopes within specific Gag regions is associated with maintenance of a low steady-state viremia in human immunodeficiency virus type 1-seropositive patientsQ35784745
Effective T-cell responses select human immunodeficiency virus mutants and slow disease progressionQ35857259
Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte responseQ36399559
Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infectionQ36898637
Hierarchical targeting of subtype C human immunodeficiency virus type 1 proteins by CD8+ T cells: correlation with viral loadQ37009811
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infectionQ37273158
Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infectionQ37366149
Development of a nucleic acid sequence-based amplification assay that uses gag-based molecular beacons to distinguish between human immunodeficiency virus type 1 subtype C and C' infections in EthiopiaQ37419775
A dominant role for CD8+-T-lymphocyte selection in simian immunodeficiency virus sequence variationQ37683178
Recombination of HIV type 1C (C'/C") in Ethiopia: possible link of EthHIV-1C' to subtype C sequences from the high-prevalence epidemics in India and Southern AfricaQ42615626
Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infectionQ43518634
AIDS: prehistory of HIV-1.Q43595386
Proliferation, but not interleukin 2 production, of Gag-specific CD8+ T cells is associated with low HIV viremia and high CD4 counts in HIV-1-infected Chinese individualsQ44740724
Interactive association of proviral load and IFN-gamma-secreting T cell responses in HIV-1C infectionQ45300224
Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitopeQ45421129
Association of Polymorphisms in Human Leukocyte Antigen Class I and Transporter Associated with Antigen Processing Genes with Resistance to Human Immunodeficiency Virus Type 1 InfectionQ45723833
ISOLATION BY DISTANCE IN EQUILIBRIUM AND NON-EQUILIBRIUM POPULATIONS.Q46207753
Identification of a genetic subcluster of HIV type 1 subtype C (C') widespread in EthiopiaQ46305847
Surveillance technology for HIV-1 subtype C in Ethiopia: an env-based NASBA molecular beacon assay to discriminate between subcluster C and C'.Q46379711
A statistical test for detecting geographic subdivisionQ46747673
HIV type 1 C and C' subclusters based on long terminal repeat sequences in the Ethiopian type 1 subtype C epidemicQ46989682
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P921main subjectepidemicQ44512
P304page(s)33-54
P577publication date2010-01-07
P1433published inVirusesQ7935305
P1476titleHIV-1 Subtype C Phylodynamics in the Global Epidemic
P478volume2

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cites work (P2860)
Q36207177A Generalized Entropy Measure of Within-Host Viral Diversity for Identifying Recent HIV-1 Infections
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Q33705999HIV-1 subtype A gag variability and epitope evolution
Q28607391History and origin of the HIV-1 subtype C epidemic in South Africa and the greater southern African region
Q34328297Molecular epidemiology of HIV-1 subtypes in India: origin and evolutionary history of the predominant subtype C.
Q34359213Phylodynamics of HIV-1 subtype C epidemic in east Africa
Q33713838Phylogenetic characterization of six full-length HIV-1 subtype C molecular clones from three patients: identification of rare subtype C strains containing two NF-κB motifs in the long terminal repeat
Q37206422Phylogenetic inferences on HIV-1 transmission: implications for the design of prevention and treatment interventions
Q35069391Phylogenetic relatedness of circulating HIV-1C variants in Mochudi, Botswana
Q30402036Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning
Q30397336Sensitive Next-Generation Sequencing Method Reveals Deep Genetic Diversity of HIV-1 in the Democratic Republic of the Congo
Q35753695Viral Genetic Linkage Analysis in the Presence of Missing Data.

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