Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli

scientific article published on 2 February 2007

Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/JB.01713-06
P932PMC publication ID1855809
P698PubMed publication ID17277072
P5875ResearchGate publication ID6527832

P2093author name stringDonald L Court
Mikhail Bubunenko
Teresa Baker
P2860cites workExperimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655Q22065459
Essential genes of a minimal bacteriumQ22066349
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collectionQ22122301
Phenotype microarrays for high-throughput phenotypic testing and assay of gene functionQ24619199
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterizationQ24676777
A spring-loaded state of NusG in its functional cycle is suggested by X-ray crystallography and supported by site-directed mutantsQ27640575
A genomic perspective on protein familiesQ27860913
Ribosome structure and the mechanism of translationQ28209121
Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phaseQ28211182
Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent controlQ28266570
Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coliQ28284860
Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coliQ28297570
An efficient recombination system for chromosome engineering in Escherichia coliQ29615038
Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strainsQ30448545
Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10Q44700986
Requirement for E. coli NusG protein in factor-dependent transcription terminationQ44708702
The ribosome-associated inhibitor A reduces translation errorsQ44953578
Insertional disruption of the nusB (ssyB) gene leads to cold-sensitive growth of Escherichia coli and suppression of the secY24 mutationQ45049536
Mutants lacking individual ribosomal proteins as a tool to investigate ribosomal propertiesQ46839464
Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coliQ47625631
Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivoQ47793190
Growth phase coupled modulation of Escherichia coli ribosomesQ47848573
A set of recombineering plasmids for gram-negative bacteriaQ50080127
Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.Q52533957
NusA is required for ribosomal antitermination and for modulation of the transcription elongation rate of both antiterminated RNA and mRNA.Q54566063
Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20Q54661759
Ribosomal RNA operon anti-termination. Function of leader and spacer region box B-box A sequences and their conservation in diverse micro-organismsQ69115064
Conditionally lethal nusAts mutation of Escherichia coli reduces transcription termination but does not affect antitermination of bacteriophage lambdaQ70146686
Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcriptionQ70535996
Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coliQ73418951
Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coliQ74355669
Antiterminator-dependent modulation of transcription elongation rates by NusB and NusGQ77928082
Assembly of the 30S ribosomal subunitQ78842191
How many genes can make a cell: the minimal-gene-set conceptQ31029180
High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotidesQ33948878
The search for essential genesQ33987229
Proteins shared by the transcription and translation machinesQ34052778
Exoribonucleases and their multiple roles in RNA metabolismQ34070559
Transposon-based approaches to identify essential bacterial genesQ34106591
Microbial minimalism: genome reduction in bacterial pathogensQ34118332
Rho-dependent termination and ATPases in transcript terminationQ34147881
Requirement for NusG for transcription antitermination in vivo by the lambda N proteinQ34312339
30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15.Q34702878
Chromosomal duplications in bacteria, fruit flies, and humansQ34732100
Genetic engineering using homologous recombinationQ34995474
Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rhoQ35005488
A novel stress-response protein that binds at the ribosomal subunit interface and arrests translationQ35133779
Genetic analysis of the rnc operon of Escherichia coliQ35424534
Functional analysis of the ffh-trmD region of the Escherichia coli chromosome by using reverse geneticsQ35595615
Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli.Q35646688
Identification of a putative Bacillus subtilis rho geneQ35966815
Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.Q36083899
The social life of ribosomal proteinsQ36107730
ssaD1, a suppressor of secA51(Ts) that renders growth of Escherichia coli cold sensitive, is an early amber mutation in the transcription factor gene nusBQ36109208
Analysis of the Escherichia coli nusA10(Cs) allele: relating nucleotide changes to phenotypesQ36130901
In vivo effect of NusB and NusG on rRNA transcription antiterminationQ36239356
Ribosomal proteins in the spotlightQ36300781
Inversions between ribosomal RNA genes of Escherichia coliQ36379937
A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.Q37055071
An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteriaQ37166496
Creating ribosomes with an all-RNA 30S subunit P siteQ37493820
Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction.Q38331027
rho is not essential for viability or virulence in Staphylococcus aureusQ39476862
Assembly of bacterial ribosomesQ39923208
RNA processing in prokaryotic cellsQ40486145
Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translationQ40690983
RNA and protein elements of E. coli and lambda transcription antitermination complexesQ40886792
Transcription antitermination: the lambda paradigm updatedQ41034487
Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiationQ43113784
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)2844-2853
P577publication date2007-02-02
P1433published inJournal of BacteriologyQ478419
P1476titleEssentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli
P478volume189

Reverse relations

cites work (P2860)
Q33642780A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli
Q41932638A single missense mutation in a coiled-coil domain of Escherichia coli ribosomal protein S2 confers a thermosensitive phenotype that can be suppressed by ribosomal protein S1.
Q41962414Antifragility and Tinkering in Biology (and in Business) Flexibility Provides an Efficient Epigenetic Way to Manage Risk
Q54351595Cell response of Escherichia coli to cisplatin-induced stress.
Q98177638Combatting Persister Cells With Substituted Indoles
Q31126928Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality
Q37065104Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity
Q38327247Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
Q41900492Crippling the essential GTPase Der causes dependence on ribosomal protein L9.
Q36158538Differential effects of ribosomal proteins and Mg2+ ions on a conformational switch during 30S ribosome 5'-domain assembly
Q35625131Differential requirements of singleplex and multiplex recombineering of large DNA constructs
Q43189616Effects of antibiotics on quorum sensing in Pseudomonas aeruginosa
Q36814230Effects of post-transcriptional regulation on phenotypic noise in Escherichia coli
Q47286270Ensemble and single-molecule FRET studies of protein synthesis.
Q35272458Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
Q41475933Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes.
Q36966969Evolutionary comparison of ribosomal operon antitermination function
Q41032751Fluorescence bimolecular complementation enables facile detection of ribosome assembly defects in Escherichia coli.
Q53811451Gene Network Analysis of Metallo Beta Lactamase Family Proteins Indicates the Role of Gene Partners in Antibiotic Resistance and Reveals Important Drug Targets.
Q41836754Genome of Mycoplasma arthritidis
Q90665191In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli
Q37405771Inhibition of bacterial ribosome assembly: a suitable drug target?
Q33407191IrrE, a global regulator of extreme radiation resistance in Deinococcus radiodurans, enhances salt tolerance in Escherichia coli and Brassica napus
Q33331457Large-scale transposon mutagenesis of Mycoplasma pulmonis
Q33860611MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering.
Q55311014Metatranscriptome Analysis of the Vaginal Microbiota Reveals Potential Mechanisms for Protection against Metronidazole in Bacterial Vaginosis.
Q41885642Modulation of DNA damage tolerance in Escherichia coli recG and ruv strains by mutations affecting PriB, the ribosome and RNA polymerase
Q35165327Multiple in vivo pathways for Escherichia coli small ribosomal subunit assembly occur on one pre-rRNA
Q36532663Nus transcription elongation factors and RNase III modulate small ribosome subunit biogenesis in Escherichia coli.
Q35100696NusA interaction with the α subunit of E. coli RNA polymerase is via the UP element site and releases autoinhibition
Q28597043Origin of a folded repeat protein from an intrinsically disordered ancestor
Q35165320Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
Q39367031Quick change: post-transcriptional regulation in Pseudomonas
Q43053415Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons of Escherichia coli
Q28307909Recombineering: a homologous recombination-based method of genetic engineering
Q38311484Recombineering: using drug cassettes to knock out genes in vivo
Q41106639Regulation of Ribosomal Protein Operons rplM-rpsI, rpmB-rpmG, and rplU-rpmA at the Transcriptional and Translational Levels.
Q33527129Relationship between operon preference and functional properties of persistent genes in bacterial genomes
Q37340855Rho directs widespread termination of intragenic and stable RNA transcription.
Q35168946Search for novel candidate mutations for metronidazole resistance in Helicobacter pylori using next-generation sequencing.
Q58200362Small-Molecule Inhibitors of the NusB-NusE Protein-Protein Interaction with Antibiotic Activity
Q28831194Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica
Q27653291Structural and Functional Analysis of the E. coli NusB-S10 Transcription Antitermination Complex
Q27666267Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination
Q99410783Structure of the bacterial ribosome at 2 Å resolution
Q36727639SuhB Associates with Nus Factors To Facilitate 30S Ribosome Biogenesis in Escherichia coli
Q28249040Systematic chromosomal deletion of bacterial ribosomal protein genes
Q49791070The Essential Genome of Escherichia coli K-12.
Q54437426The structure of the R184A mutant of the inositol monophosphatase encoded by suhB and implications for its functional interactions in Escherichia coli.
Q38192822The translational apparatus of plastids and its role in plant development
Q35879284Transcription antitermination by translation initiation factor IF1.
Q34747389Transposon mutagenesis of the extremely thermophilic bacterium Thermus thermophilus HB27.
Q35162297Validation of a fluorescence-based screening concept to identify ribosome assembly defects in Escherichia coli

Search more.