Allele-specific analysis of DNA replication origins in mammalian cells

scientific article published on 19 May 2015

Allele-specific analysis of DNA replication origins in mammalian cells is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2015NatCo...6.7051B
P356DOI10.1038/NCOMMS8051
P2888exact matchhttps://scigraph.springernature.com/pub.10.1038/ncomms8051
P932PMC publication ID4479011
P698PubMed publication ID25987481
P5875ResearchGate publication ID277087307

P2093author name stringMirit I Aladjem
Eric E Bouhassira
Julien Lajugie
Rituparna Mukhopadhyay
Boris Bartholdy
P2860cites workProgressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.Q52033311
DNA secondary structures: helices, wrinkles, and junctions.Q52711671
Structural Features of Intra- and Intermolecular G-Quadruplexes Derived from Telomeric RepeatsQ57699272
A sodium-potassium switch in the formation of four-stranded G4-DNAQ59082353
Model-based analysis of ChIP-Seq (MACS)Q21183902
Fast and accurate short read alignment with Burrows-Wheeler transformQ24653853
Human mitochondrial DNA replicationQ26828886
Controlling DNA replication origins in response to DNA damage - inhibit globally, activate locallyQ26864402
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing dataQ27860742
G-quadruplex DNA structures--variations on a themeQ28201734
GenPlay, a multipurpose genome analyzer and browserQ28238161
MEME SUITE: tools for motif discovery and searchingQ29547204
BEDTools: a flexible suite of utilities for comparing genomic featuresQ29547332
Indexing strategies for rapid searches of short words in genome sequences.Q33288972
Global reorganization of replication domains during embryonic stem cell differentiationQ33374614
A clustering approach for identification of enriched domains from histone modification ChIP-Seq dataQ33464035
Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organizationQ33553015
Sequencing newly replicated DNA reveals widespread plasticity in human replication timingQ33591861
A chromatin structure-based model accurately predicts DNA replication timing in human cellsQ33597313
Asynchronous DNA replication within the human beta-globin gene locusQ33662537
Replication-associated strand asymmetries in mammalian genomes: toward detection of replication originsQ33895906
A dynamic programming algorithm for identification of triplex-forming sequencesQ33972300
Telomeres: structures in need of unwindingQ34194407
Evaluating genome-scale approaches to eukaryotic DNA replicationQ34232735
R-loop formation is a distinctive characteristic of unmethylated human CpG island promotersQ34258378
Replication timing of the human genomeQ34543543
Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysisQ34760556
Genetic variation in human DNA replication timingQ35178159
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved featuresQ35195952
Genome-wide depletion of replication initiation events in highly transcribed regionsQ35493806
Genome-wide identification and characterization of replication origins by deep sequencingQ36245258
Replication fork stalling at natural impedimentsQ36755308
Replication program of active and inactive multigene families in mammalian cellsQ36788974
Novel, high-yield red blood cell production methods from CD34-positive cells derived from human embryonic stem, yolk sac, fetal liver, cord blood, and peripheral bloodQ36861652
Replication in context: dynamic regulation of DNA replication patterns in metazoansQ36875519
Global organization of replication time zones of the mouse genomeQ36915079
Modular structure of the human lamin B2 replicatorQ37011238
DNA replication origins.Q37197487
The human beta-globin replication initiation region consists of two modular independent replicatorsQ37276589
Random replication of the inactive X chromosomeQ37420353
Predictable dynamic program of timing of DNA replication in human cellsQ37471872
G4 motifs affect origin positioning and efficiency in two vertebrate replicatorsQ37723984
Eukaryotic chromosome DNA replication: where, when, and how?Q37725931
DNA replication timing: Coordinating genome stability with genome regulation on the X chromosome and beyondQ38241383
Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.Q39321886
GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interfaceQ39768158
DNA Triplexes: Solution Structures, Hydration Sites, Energetics, Interactions, and FunctionQ40392807
Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.Q40633778
The structure and function of yeast ARS elementsQ40797768
Origins of DNA replication in metazoan chromosomesQ40867471
Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNAQ41023029
Participation of the human beta-globin locus control region in initiation of DNA replicationQ41272868
DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicaseQ41769196
A toolbox for predicting g-quadruplex formation and stabilityQ41948423
Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repairQ42556770
New insights into replication origin characteristics in metazoansQ42559394
Initiation of DNA replication at CpG islands in mammalian chromosomesQ42643271
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.Q43959701
DNA secondary structures and the evolution of hypervariable tandem arraysQ45293989
Inhibitory effects of expanded GAA.TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivoQ48034382
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P304page(s)7051
P577publication date2015-05-19
P1433published inNature CommunicationsQ573880
P1476titleAllele-specific analysis of DNA replication origins in mammalian cells
P478volume6

Reverse relations

cites work (P2860)
Q88595593Allele-specific control of replication timing and genome organization during development
Q38608936Biological action in Read-Write genome evolution
Q93064854Control of DNA replication timing in the 3D genome
Q36886899Distinct epigenetic features of differentiation-regulated replication origins
Q96576695Evolutionary advantage of anti-parallel strand orientation of duplex DNA
Q51415384Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.
Q37473013Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).
Q44874982Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips
Q92244113H2A.Z facilitates licensing and activation of early replication origins
Q92092095Involvement of G-quadruplex regions in mammalian replication origin activity
Q48330340L1 retrotransposon antisense RNA within ASAR lncRNAs controls chromosome-wide replication timing.
Q90224942Mechanisms of DNA Replication and Repair: Insights from the Study of G-Quadruplexes
Q90645533Mechanisms of establishment and functional significance of DNA demethylation during erythroid differentiation
Q39014876Order from clutter: selective interactions at mammalian replication origins
Q36676565Quadruplex formation by both G-rich and C-rich DNA strands of the C9orf72 (GGGGCC)8•(GGCCCC)8 repeat: effect of CpG methylation
Q90117376Reciprocal monoallelic expression of ASAR lncRNA genes controls replication timing of human chromosome 6
Q50423784Regulation of Replication Origins.
Q36969038Replicating Large Genomes: Divide and Conquer
Q37022588Replication origins: determinants or consequences of nuclear organization?
Q50134830Replication timing and nuclear structure.
Q36952044Replication timing and transcriptional control: beyond cause and effect-part III.
Q59810213The Protective Role of Dormant Origins in Response to Replicative Stress
Q51033425The gastrula transition reorganizes replication-origin selection in Caenorhabditis elegans.
Q52712164[How genomic approaches help the understanding of the initiation of DNA replication].

Search more.