Small change: keeping pace with microevolution

scientific article published on June 2004

Small change: keeping pace with microevolution is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P6179Dimensions Publication ID1047018846
P356DOI10.1038/NRMICRO904
P2888exact matchhttps://scigraph.springernature.com/pub.10.1038/nrmicro904
P698PubMed publication ID15152204

P2093author name stringEdward J Feil
P2860cites workGenome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genomeQ21994448
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiationQ21994463
Genome sequence of Yersinia pestis KIMQ22065462
Genome of the Bacterium Streptococcus pneumoniae Strain R6Q22065464
Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicumQ22065465
Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58Q22065549
Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatisQ22065557
The Minimal Gene Complement of Mycoplasma genitaliumQ22065573
The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)Q22065764
Comparative genome analysis of Vibrio vulnificus, a marine pathogenQ22065766
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiensQ22065767
A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisQ22065827
50 Million Years of Genomic Stasis in Endosymbiotic BacteriaQ22065832
Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58Q22065836
Lysergic acid diethylamide- and mescaline-induced attenuation of the effect of punishment in the ratQ22065838
Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniaeQ22065841
The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain RlowQ22065907
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129Q22065991
Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the ChlamydiaceaeQ22065992
The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humansQ22065996
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonisQ22065997
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.Q22065998
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniaeQ22066001
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.Q22066206
The genome sequence of the facultative intracellular pathogen Brucella melitensisQ22066222
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiaeQ22066228
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbiontsQ22066244
Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogenQ22066245
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000Q22066254
The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticusQ22066259
The complete genome sequence of Mycobacterium bovisQ22066275
The genome sequence of Clostridium tetani, the causative agent of tetanus diseaseQ22066366
Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eaterQ22066369
Reductive genome evolution in Buchnera aphidicolaQ22066374
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440Q22121951
Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal diseaseQ22121956
Comparative genomes of Chlamydia pneumoniae and C. trachomatisQ22122313
Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
The complete genome sequence of the gastric pathogen Helicobacter pyloriQ22122352
The complete genome sequence of the gram-positive bacterium Bacillus subtilisQ22122360
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Q22122369
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18Q22122370
Genome sequence of Yersinia pestis, the causative agent of plagueQ22122371
Massive gene decay in the leprosy bacillusQ22122381
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7Q22122385
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APSQ22122392
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogenQ22122393
DNA sequence of both chromosomes of the cholera pathogen Vibrio choleraeQ22122394
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and AnalysisQ22122395
Frequent interspecific genetic exchange between commensal Neisseriae and Neisseria meningitidisQ47854732
Clonal divergence in Escherichia coli as a result of recombination, not mutationQ48077857
Is Mycobacterium tuberculosis 15,000 years old?Q48078215
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescensQ48225342
Detection of recombination among Salmonella enterica strains using the incongruence length difference test.Q50108488
Parallel evolution of virulence in pathogenic Escherichia coli.Q50120324
Reconciling the many faces of lateral gene transfer.Q55035590
The power and promise of population genomics: from genotyping to genome typingQ58748416
Localized sex in bacteriaQ59062612
Sequence variation in Helicobacter pyloriQ73423086
Detecting recombination from gene treesQ74528770
Spot the difference: applications of subtractive hybridisation to the study of bacterial pathogensQ34644731
Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typingQ34975213
Inferences from whole-genome sequences of bacterial pathogensQ34998384
How clonal is Staphylococcus aureus?Q35006020
Detection of bacterial pathogens in environmental samples using DNA microarraysQ35091235
Evolution of minimal-gene-sets in host-dependent bacteria.Q35618738
A whole-genome microarray reveals genetic diversity among Helicobacter pylori strainsQ35852799
Free recombination within Helicobacter pyloriQ36527799
Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematicsQ36665422
Extensive repetitive DNA facilitates prokaryotic genome plasticityQ37089596
Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemicQ37116927
Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA.Q37876203
Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity.Q38976676
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilisQ39597331
Virulent combinations of adhesin and toxin genes in natural populations of Staphylococcus aureusQ39656261
Population genetics of pathogenic bacteriaQ39704129
Evolutionary dynamics of full genome content in Escherichia coliQ40388521
Gradual evolution in bacteria: evidence from Bacillus systematicsQ40544224
Phylogenetic evidence for recombination in dengue virusQ40638689
Evidence that surface fibrils expressed by Haemophilus influenzae type b promote attachment to human epithelial cellsQ41394084
Deletions of chromosomal regions coding for fimbriae and hemolysins occur in vitro and in vivo in various extraintestinal Escherichia coli isolatesQ42018719
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.Q42645426
A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondriaQ43991878
Role of interspecies transfer of chromosomal genes in the evolution of penicillin resistance in pathogenic and commensal Neisseria speciesQ44144332
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitaminsQ33968067
Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniaeQ34015665
Intraspecies variation in bacterial genomes: the need for a species genome conceptQ34034113
What are bacterial species?Q34141371
Genome evolution in bacterial endosymbionts of insectsQ34157691
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchisepticaQ34221221
Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbesQ34263261
Multi-locus sequence typing: a tool for global epidemiologyQ34269596
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strainsQ34318969
Recombination and the population structures of bacterial pathogensQ34360825
Evolutionary genomics of pathogenic bacteriaQ34515807
Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequencesQ34588929
Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491Q22122399
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequenceQ22122411
The genome sequence of Rickettsia prowazekii and the origin of mitochondriaQ22122428
Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pyloriQ22122443
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteriaQ22122503
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracisQ22122504
A new evolutionary scenario for the Mycobacterium tuberculosis complexQ24531514
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18Q24554266
Characterization and Pathogenic Significance of Vibrio vulnificus Antigens Preferentially Expressed in Septicemic PatientsQ24564924
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristicsQ24652261
Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganismsQ24685491
The complete genome sequence of Escherichia coli K-12Q27860542
Whole-genome random sequencing and assembly of Haemophilus influenzae RdQ27860765
Whole genome sequencing of meticillin-resistant Staphylococcus aureusQ28202807
Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whippleiQ28212154
Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracisQ28217152
The genome of the natural genetic engineer Agrobacterium tumefaciens C58Q28492352
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)Q29547307
An approximately unbiased test of phylogenetic tree selectionQ29547508
Mechanisms of evolution in Rickettsia conorii and R. prowazekiiQ29615837
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing dataQ29617369
SplitsTree: analyzing and visualizing evolutionary dataQ29617896
Evolution in bacteria: evidence for a universal substitution rate in cellular genomesQ29618187
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global disseminationQ29618475
Comparative genomics of BCG vaccines by whole-genome DNA microarrayQ29618558
How clonal are bacteria?Q29618572
Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.Q30332577
Microevolutionary genomics of bacteriaQ30841619
Estimating recombination rates from population-genetic dataQ30884546
Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosisQ33678428
Multilocus sequence typingQ33798073
Analysis of the genetic diversity of Helicobacter pylori: the tale of two genomesQ33842737
The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidisQ33879680
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilisQ33965431
Phage as agents of lateral gene transferQ33967977
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectmicroevolutionQ680054
P304page(s)483-495
P577publication date2004-06-01
P1433published inNature Reviews MicrobiologyQ1071797
P1476titleSmall change: keeping pace with microevolution
P478volume2

Reverse relations

cites work (P2860)
Q37470441"Epidemic clones" of Listeria monocytogenes are widespread and ancient clonal groups
Q5432373710-Fold increase (2006-11) in the rate of healthy subjects with extended-spectrum β-lactamase-producing Escherichia coli faecal carriage in a Parisian check-up centre.
Q51677801A comparison of homologous recombination rates in bacteria and archaea.
Q34166182A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity
Q33367141A new perspective on Listeria monocytogenes evolution
Q38718356A null model for microbial diversification.
Q31157416Analysis of the population structure of Anaplasma phagocytophilum using multilocus sequence typing
Q33580140Assessing the value of DNA barcodes and other priority gene regions for molecular phylogenetics of Lepidoptera.
Q34024029Assessing the value of DNA barcodes for molecular phylogenetics: effect of increased taxon sampling in lepidoptera.
Q33477667Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains
Q36172445Azole preexposure affects the Aspergillus fumigatus population in patients
Q36913761Bacterial physiology, regulation and mutational adaptation in a chemostat environment
Q31110190Biodiversity of vibrios
Q36844789Borrelia burgdorferi sensu stricto is clonal in patients with early Lyme borreliosis
Q21092503Comparative and evolutionary analysis of the bacterial homologous recombination systems
Q22065748Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
Q33396645Comparison of multilocus variable-number tandem-repeat analysis and multilocus sequence typing for differentiation of hemolytic-uremic syndrome-associated Escherichia coli (HUSEC) collection strains
Q37333294Comparisons between geographically diverse samples of carried Staphylococcus aureus.
Q92127716Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils
Q30367828Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing.
Q42738443Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population
Q39361931Diversification of DNA sequences in the symbiotic genome of Rhizobium etli
Q38680375Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study
Q41783344Diversity of microcystin genotypes among populations of the filamentous cyanobacteria Planktothrix rubescens and Planktothrix agardhii
Q33556039Effects of antifungal interventions on the outcome of experimental infections with phenotypic switch variants of Cryptococcus neoformans
Q33248814Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
Q34233268Evidence for clonal evolution among highly polymorphic genes in methicillin-resistant Staphylococcus aureus
Q40333289Evidence of localized prophage-host recombination in the lytA gene, encoding the major pneumococcal autolysin
Q35689669Evolutionary dynamics of Ralstonia solanacearum.
Q87292833Evolutionary forces in Mycobacterium tuberculosis
Q40703014Evolutionary genetics of the accessory gene regulator (agr) locus in Staphylococcus aureus
Q51647339Explaining microbial population genomics through phage predation.
Q22122304Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains
Q43050663Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks
Q48152603Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes.
Q58703027Genetic and population analyses of Vibrio parahaemolyticus isolates from three major coastal regions in China
Q92250875Genetic differences in Chlamydia pecorum between neighbouring sub-populations of koalas (Phascolarctos cinereus)
Q33293602Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches
Q42424599Genetic population structure of the soil bacterium Myxococcus xanthus at the centimeter scale
Q48088681Genetic variability in environmental isolates of Legionella pneumophila from Comunidad Valenciana (Spain).
Q33477996Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Q33850939Genomic insights that advance the species definition for prokaryotes
Q41548348Genomic plasticity and rapid host switching can promote the evolution of generalism: a case study in the zoonotic pathogen Campylobacter
Q30885956Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.
Q33821732Global divergence of microbial genome sequences mediated by propagating fronts
Q36797710Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.
Q36957862High genetic diversity of nontypeable Haemophilus influenzae isolates from two children attending a day care center
Q39660863Hydrogen peroxide-dependent DNA release and transfer of antibiotic resistance genes in Streptococcus gordonii
Q33215551Identification, distribution, and expression of novel genes in 10 clinical isolates of nontypeable Haemophilus influenzae.
Q35091975Increased fitness and alteration of metabolic pathways during Bacillus subtilis evolution in the laboratory
Q29994504Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?
Q90189731Lineage, Antimicrobial Resistance and Virulence of Citrobacter spp
Q37156439Microbial diversity and the genetic nature of microbial species
Q36830873Microbial variome database: point mutations, adaptive or not, in bacterial core genomes
Q34072164Molecular musings in microbial ecology and evolution
Q37036186Multilocus sequence analysis provides insights into molecular epidemiology of Chlamydia pecorum infections in Australian sheep, cattle, and koalas.
Q40007080Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination
Q37263630Multilocus sequence typing reveals evidence of homologous recombination linked to antibiotic resistance in the genus Salinispora
Q30984833Multilocus sequence typing: Data analysis in clinical microbiology and public health
Q35561221New Short Tandem Repeat-Based Molecular Typing Method for Pneumocystis jirovecii Reveals Intrahospital Transmission between Patients from Different Wards
Q37026356Optimized Multilocus variable-number tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for Listeria monocytogenes clone identification and surveillance
Q35542002Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium
Q33500669Pherotypes are driving genetic differentiation within Streptococcus pneumoniae.
Q35088481Phylogenetic analysis of Staphylococcus aureus CC398 reveals a sub-lineage epidemiologically associated with infections in horses
Q33547216Phylogenetic analysis of enterohemorrhagic Escherichia coli O157, Germany, 1987-2008
Q33387416Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
Q39762768Phylogenetic backgrounds and virulence profiles of atypical enteropathogenic Escherichia coli strains from a case-control study using multilocus sequence typing and DNA microarray analysis.
Q36172185Phylogenetic distribution of CTX-M- and non-extended-spectrum-β-lactamase-producing Escherichia coli isolates: group B2 isolates, except clone ST131, rarely produce CTX-M enzymes.
Q28302574Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing
Q24533563Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis.
Q30359925Population analysis of Vibrio parahaemolyticus originating from different geographical regions demonstrates a high genetic diversity.
Q37409324Population genomics and the bacterial species concept
Q34976485Population structure of Francisella tularensis
Q41550633Preliminary Investigation on Multiple-Locus Variable Number Tandem Repeat Analysis Profiles of Listeria Monocytogenes Isolates from Pork Meat Tested from Packaging to Fork.
Q21563515Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems
Q30422122Rise and fall of pandemic Vibrio parahaemolyticus serotype O3:K6 in southern Chile
Q91933663Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-Sea Hydrothermal Vents
Q28768050Sex and virulence in Escherichia coli: an evolutionary perspective
Q42852183Systematic overestimation of gene gain through false diagnosis of gene absence
Q21266710The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli
Q28742625The impact of recombination on dN/dS within recently emerged bacterial clones
Q41081153The maintenance of sex in bacteria is ensured by its potential to reload genes.
Q36245287The multiplicity of divergence mechanisms in a single evolving population
Q33552298The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool
Q37299242The rise and fall of bacterial clones: Streptococcus pneumoniae
Q22065134The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis
Q35129964Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
Q37628671Transition of Enterococcus faecium from commensal organism to nosocomial pathogen.
Q47753442Two distinct Photobacterium populations thrive in ancient Mediterranean sapropels
Q43166146Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples
Q34552932Use of somatic mutations to quantify random contributions to mouse development
Q33519502Use of zebrafish to probe the divergent virulence potentials and toxin requirements of extraintestinal pathogenic Escherichia coli
Q35193523Using multilocus sequence typing to study bacterial variation: prospects in the genomic era.
Q28475100Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization
Q37009404Wide distribution of a high-virulence Borrelia burgdorferi clone in Europe and North America.

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