| scholarly article | Q13442814 |
| P2093 | author name string | Dykhuizen DE | |
| Guttman DS | |||
| P433 | issue | 5189 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 1380-1383 | |
| P577 | publication date | 1994-11-01 | |
| P1433 | published in | Science | Q192864 |
| P1476 | title | Clonal divergence in Escherichia coli as a result of recombination, not mutation | |
| P478 | volume | 266 |
| Q51677801 | A comparison of homologous recombination rates in bacteria and archaea. |
| Q48057168 | A comparison of the nucleotide sequences of the adk and recA genes of pathogenic and commensal Neisseria species: evidence for extensive interspecies recombination within adk. |
| Q56920110 | A distinction between the origin and maintenance of sex |
| Q33367141 | A new perspective on Listeria monocytogenes evolution |
| Q36099570 | A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation. |
| Q37208953 | A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis |
| Q28756125 | A recalibrated molecular clock and independent origins for the cholera pandemic clones |
| Q28752649 | A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus |
| Q24568178 | Accelerated evolution and Muller's rachet in endosymbiotic bacteria |
| Q42561668 | Adapt globally, act locally: the effect of selective sweeps on bacterial sequence diversity |
| Q90338746 | Aeschynomene indica-Nodulating Rhizobia Lacking Nod Factor Synthesis Genes: Diversity and Evolution in Shandong Peninsula, China |
| Q36000309 | Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing |
| Q33788371 | Alignment of a 1.2-Mb chromosomal region from three strains of Rhodobacter capsulatus reveals a significantly mosaic structure |
| Q34046378 | Ancestral lineages of human enterotoxigenic Escherichia coli |
| Q37595764 | Anthrax undervalued zoonosis. |
| Q33979706 | Antibiotic resistance in the ECOR collection: integrons and identification of a novel aad gene |
| Q24792599 | Anticipatory evolution and DNA shuffling |
| Q42508327 | Archaeology and evolution of transfer RNA genes in the Escherichia coli genome |
| Q52577417 | Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing. |
| Q34618065 | Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci. |
| Q37595674 | Bacterial genomic G+C composition-eliciting environmental adaptation |
| Q33655611 | Bacterial population genetics, evolution and epidemiology |
| Q21131623 | Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica |
| Q33891876 | BorreliaBase: a phylogeny-centered browser of Borrelia genomes |
| Q28776463 | Calibrating bacterial evolution |
| Q35559913 | ClonalFrameML: efficient inference of recombination in whole bacterial genomes |
| Q34221221 | Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica |
| Q37398878 | Comparative evolutionary analysis of the major structural subunit of Vibrio vulnificus type IV pili |
| Q33593386 | Comparison of O-antigen gene clusters of Escherichia coli (Shigella) sonnei and Plesiomonas shigelloides O17: sonnei gained its current plasmid-borne O-antigen genes from P. shigelloides in a recent event |
| Q46323402 | Constraint and Contingency Pervade the Emergence of Novel Phenotypes in Complex Metabolic Systems |
| Q42237667 | Convergent molecular evolution of genomic cores in Salmonella enterica and Escherichia coli |
| Q42624659 | Correlation of Rhs elements with Escherichia coli population structure |
| Q33678385 | Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure |
| Q30869765 | DNA polymerase active site is highly mutable: evolutionary consequences |
| Q33525518 | Derivation of Escherichia coli O157:H7 from its O55:H7 precursor |
| Q42172631 | Detecting linkage disequilibrium in bacterial populations |
| Q32063794 | Differential genome analysis of bacteria by genomic subtractive hybridization and pulsed field gel electrophoresis |
| Q39361931 | Diversification of DNA sequences in the symbiotic genome of Rhizobium etli |
| Q62739847 | Each of 3,323 metabolic innovations in the evolution of arose through the horizontal transfer of a single DNA segment |
| Q30631670 | Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts |
| Q42577782 | Effect of subinhibitory concentrations of antibiotics on intrachromosomal homologous recombination in Escherichia coli |
| Q34604787 | Effects of DNA double-strand and single-strand breaks on intrachromosomal recombination events in cell-cycle-arrested yeast cells |
| Q33782317 | Electrophoretic variation in adenylate kinase of Neisseria meningitidis is due to inter- and intraspecies recombination |
| Q30588690 | Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. |
| Q34015665 | Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae |
| Q37700327 | Estimating the relative roles of recombination and point mutation in the generation of single locus variants in Campylobacter jejuni and Campylobacter coli |
| Q46085340 | Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants. |
| Q34106726 | Evidence for widespread reticulate evolution within human duplicons |
| Q34840451 | Evolution and virulence of serogroup 6 pneumococci on a global scale |
| Q33410817 | Evolution of enterohemorrhagic escherichia coli O26 based on single-nucleotide polymorphisms |
| Q40744160 | Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen |
| Q30243898 | Evolution, genomics and epidemiology of Pseudomonas syringae: Challenges in Bacterial Molecular Plant Pathology. |
| Q24622076 | Evolutionary dynamics of Clostridium difficile over short and long time scales |
| Q61811295 | Evolutionary dynamics of bacteria in the gut microbiome within and across hosts |
| Q40388521 | Evolutionary dynamics of full genome content in Escherichia coli |
| Q30794348 | Evolutionary genomics of Borrelia burgdorferi sensu lato: findings, hypotheses, and the rise of hybrids |
| Q50117948 | Evolutionary implications of the frequent horizontal transfer of mismatch repair genes |
| Q35867457 | Evolvability of an Optimal Recombination Rate |
| Q33732744 | Expression of a clone specific DNA sequence from Staphylococcus aureus in Escherichia coli |
| Q40929003 | Extensive genomic variation within clonal bacterial groups resulted from homologous recombination |
| Q36527799 | Free recombination within Helicobacter pylori |
| Q47854732 | Frequent interspecific genetic exchange between commensal Neisseriae and Neisseria meningitidis |
| Q34008039 | Gene fragments distinguishing an epidemic-associated strain from a virulent prototype strain of Listeria monocytogenes belong to a distinct functional subset of genes and partially cross-hybridize with other Listeria species |
| Q37387763 | Genealogical typing of Neisseria meningitidis. |
| Q30157906 | Genes under positive selection in Escherichia coli. |
| Q35783351 | Genes without frontiers? |
| Q33602048 | Genetic divergence of bradyrhizobium strains nodulating soybeans as revealed by multilocus sequence analysis of genes inside and outside the symbiosis island |
| Q33293602 | Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches |
| Q41809668 | Genetic diversity of the gene cluster encoding longus, a type IV pilus of enterotoxigenic Escherichia coli |
| Q42732246 | Genetic diversity within E.coli |
| Q24564226 | Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing |
| Q40106664 | Genetic recombinational events in prokaryotes and their viruses: insight into the study of evolution and biodiversity |
| Q39482864 | Genetic structure of natural populations of Escherichia coli in wild hosts on different continents |
| Q36521441 | Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis |
| Q34532363 | Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli |
| Q33477996 | Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex |
| Q37232509 | Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 |
| Q33821732 | Global divergence of microbial genome sequences mediated by propagating fronts |
| Q54271627 | High Recombinant Frequency in Extraintestinal Pathogenic Escherichia coli Strains. |
| Q48035608 | High polymorphism in Plasmodium vivax merozoite surface protein-5 (MSP5). |
| Q33638353 | High rates of homologous recombination in the mite endosymbiont and opportunistic human pathogen Orientia tsutsugamushi |
| Q36701811 | High-resolution alignment of a 1-megabase-long genome region of three strains of Rhodobacter capsulatus |
| Q36029187 | High-throughput screening for RecA inhibitors using a transcreener adenosine 5'-O-diphosphate assay |
| Q30949472 | High-throughput sequencing in the population analysis of bacterial pathogens of humans |
| Q37208928 | Homologous recombination drives both sequence diversity and gene content variation in Neisseria meningitidis. |
| Q34617567 | Horizontal acquisition of divergent chromosomal DNA in bacteria: effects of mutator phenotypes |
| Q51565934 | Host specificity of Helicobacter pylori strains and host responses in experimentally challenged nonhuman primates. |
| Q34507120 | Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. |
| Q39680086 | Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches |
| Q34308862 | Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli |
| Q35895606 | Impermanence of bacterial clones |
| Q35091975 | Increased fitness and alteration of metabolic pathways during Bacillus subtilis evolution in the laboratory |
| Q57618457 | Inference and Analysis of the Relative Stability of Bacterial Chromosomes |
| Q37412765 | Inference of the properties of the recombination process from whole bacterial genomes |
| Q34120998 | Inferring bacterial genome flux while considering truncated genes |
| Q38957822 | Intergenic sequence comparison of Escherichia coli isolates reveals lifestyle adaptations but not host specificity. |
| Q33548124 | Internalin profiling and multilocus sequence typing suggest four Listeria innocua subgroups with different evolutionary distances from Listeria monocytogenes |
| Q33783262 | Isolation, propagation and characterisation of Cryptosporidium. |
| Q35891412 | Laboratory perspectives: Population biology and the 'new' enterococcus |
| Q33836575 | Large genomic sequence repetitions in bacteria: lessons from rRNA operons and Rhs elements |
| Q39541574 | Large-scale intersubspecific recombination in the plant-pathogenic bacterium Xylella fastidiosa is associated with the host shift to mulberry. |
| Q33374659 | Lineage specific recombination rates and microevolution in Listeria monocytogenes |
| Q36369839 | Long-term survival during stationary phase: evolution and the GASP phenotype |
| Q24558763 | Microevolution and history of the plague bacillus, Yersinia pestis |
| Q40522146 | Model-based inference of recombination hotspots in a highly variable oncogene [corrected] |
| Q24654740 | Molecular mechanisms of bacterial virulence: type III secretion and pathogenicity islands |
| Q35080314 | Molecular typing of environmental and clinical strains of Vibrio vulnificus isolated in the northeastern USA |
| Q56920168 | Molecules are more than markers: new directions in molecular microbial ecology |
| Q88311775 | Multicopy plasmids allow bacteria to escape from fitness trade-offs during evolutionary innovation |
| Q34058425 | Multilocus sequence analysis of the marine bacterial genus Tenacibaculum suggests parallel evolution of fish pathogenicity and endemic colonization of aquaculture systems |
| Q40713182 | Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity |
| Q40007080 | Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination |
| Q47819796 | Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans |
| Q24652261 | Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics |
| Q46274173 | Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria |
| Q37247776 | Mutators and sex in bacteria: conflict between adaptive strategies |
| Q54137052 | N-terminal sequence polymorphism in the coagulase gene of Staphylococcus aureus and its potential use as an epidemiological marker. |
| Q35201987 | Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site |
| Q39484606 | Natural transformation of Acinetobacter sp. strain BD413 with cell lysates of Acinetobacter sp., Pseudomonas fluorescens, and Burkholderia cepacia in soil microcosms |
| Q34168120 | Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination |
| Q33943883 | Obscured phylogeny and possible recombinational dormancy in Escherichia coli |
| Q34008836 | Ongoing horizontal and vertical transmission of virulence genes and papA alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia |
| Q21090212 | Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths |
| Q73564976 | Organization and structure of the Giardia genome |
| Q33928931 | Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing |
| Q50120324 | Parallel evolution of virulence in pathogenic Escherichia coli |
| Q35542002 | Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium |
| Q55061666 | Phenotypic innovation through recombination in genome-scale metabolic networks. |
| Q58192919 | Phylogenetic Network Construction Approaches |
| Q39502754 | Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains |
| Q34228313 | Phylogenetic incongruence in E. coli O104: understanding the evolutionary relationships of emerging pathogens in the face of homologous recombination |
| Q40744317 | Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci |
| Q88641895 | Population genetic and evolution analysis of controversial genus Edwardsiella by multilocus sequence typing |
| Q89422972 | Population genomics of bacterial host adaptation |
| Q47095877 | Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages |
| Q48062323 | Prevalence and genetic diversity of pneumococcal serogroup 6 in Australia |
| Q34785153 | Rapid and specific detection of Escherichia coli clonal group A by gene-specific PCR |
| Q34064804 | Rates of mutation and host transmission for an Escherichia coli clone over 3 years |
| Q35895593 | Recombinant transfer in the basic genome of Escherichia coli. |
| Q54572405 | Recombination and clonality in natural populations of Escherichia coli. |
| Q35798080 | Recombination and horizontal transfer of nodulation and ACC deaminase (acdS) genes within Alpha- and Betaproteobacteria nodulating legumes of the Cape Fynbos biome. |
| Q33952890 | Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. |
| Q92638300 | Recombination and mutational robustness in neutral fitness landscapes |
| Q42563068 | Recombination and selection at Brassica self-incompatibility loci. |
| Q34011963 | Recombination in the ompA gene but not the omcB gene of Chlamydia contributes to serovar-specific differences in tissue tropism, immune surveillance, and persistence of the organism |
| Q60921530 | Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex |
| Q41815030 | Recombination shapes the structure of an environmental Vibrio cholerae population |
| Q34588929 | Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences |
| Q38656614 | Recombination-Driven Genome Evolution and Stability of Bacterial Species. |
| Q36314911 | Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing |
| Q37545458 | Replicon-dependent differentiation of symbiosis-related genes in Sinorhizobium strains nodulating Glycine max. |
| Q93922323 | Reply |
| Q29618475 | Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination |
| Q42033899 | Risk management in biological evolution |
| Q36558824 | Role of homologous recombination in adaptive diversification of extraintestinal Escherichia coli |
| Q38607990 | Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain |
| Q34074439 | Roles of mutation and recombination in the evolution of protein thermodynamics |
| Q21144990 | SOS response induces persistence to fluoroquinolones in Escherichia coli |
| Q40557217 | Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. |
| Q34203956 | Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation |
| Q28768050 | Sex and virulence in Escherichia coli: an evolutionary perspective |
| Q80381276 | Sex, strains and virulence |
| Q37406333 | Side effects of antibiotics on genetic variability. |
| Q28769512 | Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca |
| Q35777674 | Small change: keeping pace with microevolution |
| Q24613060 | Species Numbers in Bacteria |
| Q36295354 | Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment |
| Q50069216 | Temporal fragmentation of speciation in bacteria |
| Q49588422 | The Experimental Study of Bacterial Evolution and Its Implications for the Modern Synthesis of Evolutionary Biology |
| Q33178975 | The detection and measurement of recombination from sequence data |
| Q36665895 | The effect of chromosome geometry on genetic diversity |
| Q34168118 | The evolutionary genomics of pathogen recombination |
| Q37692844 | The population genetics of commensal Escherichia coli |
| Q26860229 | The unexhausted potential of E. coli |
| Q34464882 | Three R's of bacterial evolution: how replication, repair, and recombination frame the origin of species |
| Q52668354 | Transmission and Toxigenic Potential of Vibrio cholerae in Hilsha Fish (Tenualosa ilisha) for Human Consumption in Bangladesh. |
| Q54242036 | Two Groups of Cocirculating, Epidemic Clostridiodes difficile Strains Microdiversify through Different Mechanisms. |
| Q34746981 | Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups |
| Q39565582 | Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies |
| Q28475100 | Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization |
| Q41474909 | When does a clone deserve a name? A perspective on bacterial species based on population genetics |
| Q37434290 | Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae |
| Q24631563 | Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs) |
| Q24642708 | Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis |
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