L-GRAAL: Lagrangian graphlet-based network aligner

scientific article published on 28 February 2015

L-GRAAL: Lagrangian graphlet-based network aligner is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/Malod-DogninP15
P356DOI10.1093/BIOINFORMATICS/BTV130
P932PMC publication ID4481854
P698PubMed publication ID25725498
P5875ResearchGate publication ID272888925

P50authorNataša PržuljQ21264447
P2093author name stringNoël Malod-Dognin
P2860cites workUnequal evolutionary conservation of human protein interactions in interologous networksQ21092867
Gene ontology: tool for the unification of biologyQ23781406
A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosomeQ24301038
Entrez Gene: gene-centered information at NCBIQ24793761
A novel genetic system to detect protein-protein interactionsQ27860915
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryQ27861116
Modeling interactome: scale-free or geometric?Q50770190
Pairwise alignment of protein interaction networksQ51944579
The Traveling-Salesman Problem and Minimum Spanning TreesQ55899753
Validation of subgradient optimizationQ56814043
The BioGRID interaction database: 2013 updateQ28280503
From molecular to modular cell biologyQ29547493
Enzyme function less conserved than anticipated.Q30330428
GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.Q30358085
Global alignment of protein-protein interaction networks by graph matching methodsQ30487834
High-resolution network biology: connecting sequence with functionQ33623110
A Network Synthesis Model for Generating Protein Interaction Network FamiliesQ34388604
Graemlin: general and robust alignment of multiple large interaction networksQ35012998
PathBLAST: a tool for alignment of protein interaction networksQ35556674
Conserved pathways within bacteria and yeast as revealed by global protein network alignmentQ36160907
Global network alignment using multiscale spectral signaturesQ36432222
Optimizing a global alignment of protein interaction networksQ37236870
Protein‐protein interactions: Making sense of networks via graph‐theoretic modelingQ37824310
A comparison of algorithms for the pairwise alignment of biological networksQ38209272
DualAligner: a dual alignment-based strategy to align protein interaction networksQ38476577
NETAL: a new graph-based method for global alignment of protein-protein interaction networks.Q38489945
Pairwise alignment of interaction networks by fast identification of maximal conserved patterns.Q38511013
Uncovering biological network function via graphlet degree signatures.Q40140345
Herpesviral protein networks and their interaction with the human proteomeQ40341630
Topological network alignment uncovers biological function and phylogenyQ41592105
SPINAL: scalable protein interaction network alignmentQ42687580
Optimal network alignment with graphlet degree vectorsQ42735175
HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networksQ42848293
Systematic identification of functional orthologs based on protein network comparisonQ43252162
Integrative network alignment reveals large regions of global network similarity in yeast and humanQ43467712
C-GRAAL: common-neighbors-based global GRAph ALignment of biological networksQ46143407
Biological network comparison using graphlet degree distributionQ46609381
MAGNA: Maximizing Accuracy in Global Network AlignmentQ46867507
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issue13
P407language of work or nameEnglishQ1860
P304page(s)2182-2189
P577publication date2015-02-28
P1433published inBioinformaticsQ4914910
P1476titleL-GRAAL: Lagrangian graphlet-based network aligner
P478volume31

Reverse relations

cites work (P2860)
Q38447722APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks
Q36218204Aligning Metabolic Pathways Exploiting Binary Relation of Reactions
Q47200714Aligning dynamic networks with DynaWAVE.
Q46310703Alignment of dynamic networks
Q91473988Comparing methods for comparing networks
Q58129906ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species
Q47756564CytoMCS: A Multiple Maximum Common Subgraph Detection Tool for Cytoscape.
Q58700216Discovering large conserved functional components in global network alignment by graph matching
Q98177073Exploiting graphlet decomposition to explain the structure of complex networks: the GHuST framework
Q64117167Functional protein representations from biological networks enable diverse cross-species inference
Q41497348Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8.
Q93035425Higher-order molecular organization as a source of biological function
Q90009837L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
Q37306822Local versus global biological network alignment
Q39429335ModuleAlign: module-based global alignment of protein-protein interaction networks
Q92967141NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families
Q33706302NFPscanner: a webtool for knowledge-based deciphering of biomedical networks
Q36220729PROPER: global protein interaction network alignment through percolation matching.
Q55514116PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
Q45986038SANA NetGO: A combinatorial approach to using Gene Ontology (GO) terms to score network alignments.
Q55011144Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience.
Q30490645Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
Q64115889Towards a data-integrated cell
Q33681051Unified Alignment of Protein-Protein Interaction Networks

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