Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers

scientific article published in December 2015

Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.PLGENE.2015.09.003
P932PMC publication ID4630809
P698PubMed publication ID26550601
P5875ResearchGate publication ID282388213

P50authorDavid LandsmanQ28360144
Leonardo Mariño-RamírezQ50419550
Felix E Enciso-RodríguezQ59705030
P2093author name stringFranklin Mayorga
Gina A Garzón-Martínez
Jaime A Osorio-Guarín
Luz Stella Barrero
Paola Delgadillo-Durán
P2860cites workGenetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grapeQ21261996
Inference of population structure using multilocus genotype dataQ24548114
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communitiesQ24647611
The Sequence Alignment/Map format and SAMtoolsQ27860966
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an updateQ29547286
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation studyQ29547289
The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction.Q30461308
Genetic variation in the Solanaceae fruit bearing species lulo and tree tomato revealed by Conserved Ortholog (COSII) markersQ30498140
Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plantsQ30837046
Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype dataQ33531424
4beta-Hydroxywithanolide E from Physalis peruviana (golden berry) inhibits growth of human lung cancer cells through DNA damage, apoptosis and G2/M arrestQ33532277
Development and characterization of microsatellite markers for the Cape gooseberry Physalis peruvianaQ34062600
High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding.Q34429280
Identification of single-copy orthologous genes between Physalis and Solanum lycopersicum and analysis of genetic diversity in Physalis using molecular markersQ34483069
A survey of sequence alignment algorithms for next-generation sequencingQ34619507
4β-Hydroxywithanolide E isolated from Physalis pruinosa calyx decreases inflammatory responses by inhibiting the NF-κB signaling in diabetic mouse adipose tissueQ35102473
Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markersQ35154169
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant cladeQ35176069
EST-SSRs as a resource for population genetic analyses.Q36829463
Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystemQ36981428
Sequencing consolidates molecular markers with plant breeding practiceQ38395429
Advances in plant genotyping: where the future will take us.Q39102673
Physangulidines A, B, and C: three new antiproliferative withanolides from Physalis angulata L.Q39397363
TASSEL: software for association mapping of complex traits in diverse samplesQ39512996
Philadelphicalactones C and D and other cytotoxic compounds from Physalis philadelphicaQ39557841
In vitro studies on the relationship between the anti-inflammatory activity of Physalis peruviana extracts and the phagocytic processQ39813110
Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markersQ40013712
EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.).Q42609402
Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs.Q53105295
Preliminary assessment of COSII gene diversity in lulo and a relative species: initial identification of genes potentially associated with domestication.Q53176918
P407language of work or nameEnglishQ1860
P921main subjectPhysalis peruvianaQ165227
genetic diversityQ585259
population structureQ112082073
P304page(s)29-37
P577publication date2015-12-01
P1433published inPlant geneQ27726830
P1476titleGenetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers
P478volume4

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cites work (P2860)
Q52608504Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Physalis peruviana L.).
Q35961674Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).
Q55083183Development of Species-Specific SCAR Markers, Based on a SCoT Analysis, to Authenticate Physalis (Solanaceae) Species.
Q64927417Genetic diversity and population structure of Cucumis sativus L. by using SSR markers.
Q33787541Workflow and web application for annotating NCBI BioProject transcriptome data.

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