| Q58003223 | A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum |
| Q34512243 | A DNA barcoding method to discriminate between the model plant Brachypodium distachyon and its close relatives B. stacei and B. hybridum (Poaceae). |
| Q35909635 | A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae) |
| Q34389743 | A RAD tag derived marker based eggplant linkage map and the location of QTLs determining anthocyanin pigmentation. |
| Q88294881 | A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit |
| Q83163178 | A detailed synteny map of the eggplant genome based on conserved ortholog set II (COSII) markers |
| Q45954243 | A dynamic interface for capsaicinoid systems biology. |
| Q33994031 | A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6 |
| Q42755671 | A high density genetic map of tobacco (Nicotiana tabacum L.) obtained from large scale microsatellite marker development |
| Q42740844 | A long PCR-based approach for DNA enrichment prior to next-generation sequencing for systematic studies |
| Q30454737 | A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato |
| Q33611748 | A single origin and moderate bottleneck during domestication of soybean (Glycine max): implications from microsatellites and nucleotide sequences |
| Q38404894 | A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics |
| Q89522045 | A transcriptome-based study on the phylogeny and evolution for taxonomic controversial subfamily Apioideae (Apiaceae) |
| Q33553878 | Allopolyploid speciation and ongoing backcrossing between diploid progenitor and tetraploid progeny lineages in the Achillea millefolium species complex: analyses of single-copy nuclear genes and genomic AFLP. |
| Q35959412 | An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry |
| Q58003202 | An EST-based linkage map reveals chromosomal translocation in Capsicum |
| Q34203677 | Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades |
| Q43244121 | Biochemical and molecular analysis of pink tomatoes: deregulated expression of the gene encoding transcription factor SlMYB12 leads to pink tomato fruit color |
| Q33890010 | Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. |
| Q47267655 | COSII genetic maps of two diploid Nicotiana species provide a detailed picture of synteny with tomato and insights into chromosome evolution in tetraploid N. tabacum |
| Q51898704 | Characterization and genetic analysis of a low-temperature-sensitive mutant, sy-2, in Capsicum chinense |
| Q21090794 | Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip |
| Q34094321 | Chasing the hare - evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae). |
| Q33920783 | Choosing and using a plant DNA barcode |
| Q33541722 | Chromosomal evolution in the plant family Solanaceae |
| Q44861326 | Combined Use of Molecular Markers and High-Resolution Melting (HRM) to Assess Chromosome Dosage in Potato Hybrids |
| Q38474512 | Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica. |
| Q47367310 | Comparative evidence for the correlated evolution of polyploidy and self-compatibility in Solanaceae |
| Q43679079 | Comparative genetic linkage map of Solanum sect. Juglandifolia: evidence of chromosomal rearrangements and overall synteny with the tomatoes and related nightshades |
| Q46241031 | Comparative oligo-FISH Mapping: An Efficient and Powerful Methodology to Reveal Karyotypic and Chromosomal Evolution. |
| Q47398448 | Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome. |
| Q30301080 | Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty. |
| Q28688519 | Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii) |
| Q35268761 | Comparative transcriptome resources of eleven Primulina species, a group of 'stone plants' from a biodiversity hot spot |
| Q50285185 | Comparative transcriptome reveal the potential adaptive evolutionary genes in Andrias davidianus. |
| Q80434903 | Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome |
| Q55252162 | Comparison of taxon-specific versus general locus sets for targeted sequence capture in plant phylogenomics. |
| Q34185832 | Comprehensive primer design for analysis of population genetics in non-sequenced organisms |
| Q46256562 | Conservation and Dispersion of Genes Conferring Resistance to Tomato Begomoviruses between Tomato and Pepper Genomes |
| Q42638588 | Conserved genetic regions across angiosperms as tools to develop single-copy nuclear markers in gymnosperms: an example using cycads. |
| Q35834919 | Correlated polymorphism in cytotype and sexual system within a monophyletic species, Lycium californicum |
| Q35063848 | De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters |
| Q42774038 | Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): a next-generation sequencing transcriptomic approach |
| Q41600549 | Development and Genetic Characterization of Advanced Backcross Materials and An Introgression Line Population of Solanum incanum in a S. melongena Background |
| Q30924254 | Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers. |
| Q33491579 | Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). |
| Q34164578 | Development of gene-based markers and construction of an integrated linkage map in eggplant by using Solanum orthologous (SOL) gene sets. |
| Q34183858 | Development of phylogenetic markers from single-copy nuclear genes for multi locus, species level analyses in the mint family (Lamiaceae). |
| Q54964686 | Development of universal genetic markers based on single-copy orthologous (COSII) genes in Poaceae |
| Q54424146 | Discovery of intron polymorphisms in cultivated tomato using both tomato and Arabidopsis genomic information. |
| Q44565376 | Distinct detoxification mechanisms confer resistance to mesotrione and atrazine in a population of waterhemp |
| Q33311003 | Diversity in conserved genes in tomato |
| Q33491777 | Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history? |
| Q53670293 | E value cutoff and eukaryotic genome content phylogenetics. |
| Q42609402 | EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.). |
| Q36829463 | EST-SSRs as a resource for population genetic analyses. |
| Q34370114 | Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles |
| Q28681802 | Evolutionary history of Triticum petropavlovskyi Udacz. et Migusch. inferred from the sequences of the 3-phosphoglycerate kinase gene |
| Q50060470 | Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae). |
| Q49123279 | Flexible tools for gene expression and silencing in tomato. |
| Q35519231 | Gene prediction and annotation in Penstemon (Plantaginaceae): A workflow for marker development from extremely low-coverage genome sequencing. |
| Q38288370 | Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae). |
| Q36789184 | Genetic Adaptation of Giant Lobelias (Lobelia aberdarica and Lobelia telekii) to Different Altitudes in East African Mountains |
| Q43167306 | Genetic and physiological analysis of tomato fruit weight and composition: influence of carbon availability on QTL detection. |
| Q35835855 | Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers |
| Q33423036 | Genetic mapping and annotation of genomic microsatellites isolated from globe artichoke |
| Q30498140 | Genetic variation in the Solanaceae fruit bearing species lulo and tree tomato revealed by Conserved Ortholog (COSII) markers |
| Q41866813 | Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain |
| Q84164705 | Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection |
| Q89997538 | Hexaploid sweetpotato (Ipomoea batatas (L.) Lam.) may not be a true type to either auto- or allopolyploid |
| Q48063165 | Hidden Variability of Floral Homeotic B Genes in Solanaceae Provides a Molecular Basis for the Evolution of Novel Functions |
| Q42509430 | Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms |
| Q34172938 | Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics |
| Q45245989 | Identification of Capsicum species using SNP markers based on high resolution melting analysis |
| Q37292236 | Identification of Loci Affecting Accumulation of Secondary Metabolites in Tomato Fruit of a Solanum lycopersicum × Solanum chmielewskii Introgression Line Population |
| Q37520775 | Identification of gene-specific polymorphisms and association with capsaicin pathway metabolites in Capsicum annuum L. collections. |
| Q44406637 | Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae). |
| Q33534007 | Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels |
| Q34483069 | Identification of single-copy orthologous genes between Physalis and Solanum lycopersicum and analysis of genetic diversity in Physalis using molecular markers |
| Q33883077 | Identification, characterization, and utilization of single copy genes in 29 angiosperm genomes |
| Q46513861 | Indel Group in Genomes (IGG) Molecular Genetic Markers. |
| Q30000854 | Inferring phylogenies from RAD sequence data |
| Q40657521 | Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families |
| Q38412597 | Linking genome annotation projects with genetic disorders using ontologies |
| Q34768058 | Linking the potato genome to the conserved ortholog set (COS) markers |
| Q34052525 | Localization of QTLs for in vitro plant regeneration in tomato |
| Q54504462 | Localization of anchor loci representing five hundred annotated rice genes to wheat chromosomes using PLUG markers. |
| Q34786713 | Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant |
| Q33522314 | MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement |
| Q111629421 | Microfluidic PCR-based target enrichment: A case study in two rapid radiations of Commiphora (Burseraceae) from Madagascar |
| Q33507447 | MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family |
| Q36186510 | Molecular Linkage Mapping and Marker-Trait Associations with NlRPT, a Downy Mildew Resistance Gene in Nicotiana langsdorffii |
| Q33444507 | Multilocus sequence data reveal extensive departures from equilibrium in domesticated tomato (Solanum lycopersicum L.). |
| Q33402447 | Natural variation in an ABC transporter gene associated with seed size evolution in tomato species |
| Q46080528 | Novel nuclear markers inform the systematics and the evolution of serpentine use in Streptanthus and allies (Thelypodieae, Brassicaceae). |
| Q92077707 | Nuclear loci developed from multiple transcriptomes yield high resolution in phylogeny of scaly tree ferns (Cyatheaceae) from China and Vietnam |
| Q21093422 | OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics |
| Q35865193 | PCR-based landmark unique gene (PLUG) markers effectively assign homoeologous wheat genes to A, B and D genomes |
| Q33396605 | Phylogenetic utility of nuclear nitrate reductase: a multi-locus comparison of nuclear and chloroplast sequence data for inference of relationships among American Lycieae (Solanaceae). |
| Q57143810 | Plastome sequences and exploration of tree-space help to resolve the phylogeny of riceflowers (Thymelaeaceae: Pimelea) |
| Q31079151 | Plum (Prunus domestica) trees transformed with poplar FT1 result in altered architecture, dormancy requirement, and continuous flowering |
| Q26866243 | Polyploidy-associated genome modifications during land plant evolution |
| Q26994789 | Potato genetics, genomics, and applications |
| Q42279901 | Primers for Castilleja and their utility across Orobanchaceae: II. Single-copy nuclear loci. |
| Q35906799 | Primers for low-copy nuclear genes in the Melastomataceae |
| Q37590491 | Reassessing domain architecture evolution of metazoan proteins: major impact of gene prediction errors |
| Q41845517 | Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis |
| Q34572564 | Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects |
| Q41702399 | Retracted: A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species |
| Q35809898 | SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing |
| Q33511375 | Sampling nucleotide diversity in cotton |
| Q35885807 | Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. |
| Q80787660 | Selecting single-copy nuclear genes for plant phylogenetics: a preliminary analysis for the Senecioneae (Asteraceae) |
| Q33478004 | Sequence diversity in three tomato species: SNPs, markers, and molecular evolution |
| Q28757152 | Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae |
| Q34280421 | Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota). |
| Q38810987 | Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants |
| Q35783668 | Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice |
| Q33322302 | Structural and functional genomics of tomato |
| Q47961238 | Structural homology in the Solanaceae: analysis of genomic regions in support of synteny studies in tomato, potato and pepper |
| Q37288744 | Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum |
| Q93052372 | Tackling Rapid Radiations With Targeted Sequencing |
| Q35187850 | The American cranberry: first insights into the whole genome of a species adapted to bog habitat |
| Q30461308 | The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. |
| Q46569048 | The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance. |
| Q85639242 | The first genetic map of the American cranberry: exploration of synteny conservation and quantitative trait loci |
| Q41785436 | The novel gene Ny-1 on potato chromosome IX confers hypersensitive resistance to Potato virus Y and is an alternative to Ry genes in potato breeding for PVY resistance. |
| Q46149222 | The unexpected depths of genome-skimming data: A case study examining Goodeniaceae floral symmetry genes |
| Q43633345 | The utility of nuclear conserved ortholog set II (COSII) genomic regions for species-level phylogenetic inference in Lycium (Solanaceae). |
| Q42775306 | Transcriptome analysis reveals the same 17 S-locus F-box genes in two haplotypes of the self-incompatibility locus of Petunia inflata |
| Q46291957 | Transcriptome mining for phylogenetic markers in a recently radiated genus of tropical plants (Renealmia L.f., Zingiberaceae). |
| Q30896282 | Transcriptome sequencing and marker development for four underutilized legumes. |
| Q36127670 | Transcriptome sequencing and simple sequence repeat marker development for three Macaronesian endemic plant species |
| Q31015731 | Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome |
| Q85156233 | Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture |
| Q30484404 | Unique genes in plants: specificities and conserved features throughout evolution |
| Q46547376 | Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). |
| Q34355479 | Using nuclear gene data for plant phylogenetics: progress and prospects |
| Q35964270 | Whole-genome sequencing reveals the effect of vaccination on the evolution of Bordetella pertussis |