| P50 | author | Heli Siljander | Q40817740 |
| | Mikael Knip | Q47161413 |
| P2860 | cites work | Metabolic reconstruction for metagenomic data and its application to the human microbiome | Q21092513 |
| | Low incidence of spontaneous type 1 diabetes in non-obese diabetic mice raised on gluten-free diets is associated with changes in the intestinal microbiome | Q21132451 |
| | CAMERA: a community resource for metagenomics | Q21145892 |
| | The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes | Q21284200 |
| | The COG database: an updated version includes eukaryotes | Q21284294 |
| | SmashCommunity: a metagenomic annotation and analysis tool | Q24489693 |
| | Enterotypes of the human gut microbiome | Q24489818 |
| | Metagenomic microbial community profiling using unique clade-specific marker genes | Q24599864 |
| | Human gut microbiome viewed across age and geography | Q24602950 |
| | Linking long-term dietary patterns with gut microbial enterotypes | Q24609914 |
| | QIIME allows analysis of high-throughput community sequencing data | Q24616873 |
| | A human gut microbial gene catalogue established by metagenomic sequencing | Q24618931 |
| | The Pfam protein families database | Q24619716 |
| | Cesarean versus vaginal delivery: long-term infant outcomes and the hygiene hypothesis | Q24620719 |
| | Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa | Q24622141 |
| | Toward defining the autoimmune microbiome for type 1 diabetes | Q24629032 |
| | KEGG for representation and analysis of molecular networks involving diseases and drugs | Q24644514 |
| | The "perfect storm" for type 1 diabetes: the complex interplay between intestinal microbiota, gut permeability, and mucosal immunity | Q24645048 |
| | Innate immunity and intestinal microbiota in the development of Type 1 diabetes | Q24647312 |
| | Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities | Q24647611 |
| | The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics | Q24655377 |
| | De novo assembly of human genomes with massively parallel short read sequencing | Q24655711 |
| | Velvet: algorithms for de novo short read assembly using de Bruijn graphs | Q24657623 |
| | MEGAN analysis of metagenomic data | Q24673516 |
| | SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB | Q24685829 |
| | Breastfeeding and allergy: the evidence | Q26822025 |
| | Infant nutrition and later health: a review of current evidence | Q26822415 |
| | Human milk composition: nutrients and bioactive factors | Q26822855 |
| | Type 1 diabetes | Q27000491 |
| | Interactions between the microbiota and the immune system | Q27028155 |
| | Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains | Q27496201 |
| | Effect of barrier microbes on organ-based inflammation | Q27693228 |
| | Diversity, stability and resilience of the human gut microbiota | Q28274959 |
| | Environmental triggers and determinants of type 1 diabetes | Q28283357 |
| | Development of intestinal microbiota in infants and its impact on health | Q28283698 |
| | Of mice and men: use of animal models to identify possible interventions for the prevention of autoimmune type 1 diabetes in humans | Q36248024 |
| | ConStrains identifies microbial strains in metagenomic datasets | Q36364571 |
| | MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads | Q36368703 |
| | Host remodeling of the gut microbiome and metabolic changes during pregnancy | Q36421887 |
| | Xenobiotics shape the physiology and gene expression of the active human gut microbiome | Q36554412 |
| | Fecal microbiota composition differs between children with β-cell autoimmunity and those without | Q36720600 |
| | A molecular basis for bifidobacterial enrichment in the infant gastrointestinal tract | Q36830447 |
| | Gender bias in autoimmunity is influenced by microbiota. | Q37294725 |
| | Fecal microbiota imbalance in Mexican children with type 1 diabetes | Q37501593 |
| | Modeling the impact of antibiotic exposure on human microbiota | Q37629657 |
| | Consumption of acidic water alters the gut microbiome and decreases the risk of diabetes in NOD mice. | Q37664261 |
| | Development of the human gastrointestinal microbiota and insights from high-throughput sequencing | Q37870427 |
| | Is the origin of type 1 diabetes in the gut? | Q37980043 |
| | Techniques used to characterize the gut microbiota: a guide for the clinician. | Q37997281 |
| | The 'Hygiene hypothesis' and the sharp gradient in the incidence of autoimmune and allergic diseases between Russian Karelia and Finland | Q38057812 |
| | Meta'omic analytic techniques for studying the intestinal microbiome | Q38184190 |
| | The role of infant nutrition in the prevention of future disease. | Q38237658 |
| | Removal of Bovine Insulin From Cow's Milk Formula and Early Initiation of Beta-Cell Autoimmunity in the FINDIA Pilot Study | Q38475105 |
| | The role of butyrate in human colonic epithelial cells: an energy source or inducer of differentiation and apoptosis? | Q41326181 |
| | Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding | Q42618067 |
| | Taxonomic metagenome sequence assignment with structured output models | Q42790557 |
| | Butyrate enhances the intestinal barrier by facilitating tight junction assembly via activation of AMP-activated protein kinase in Caco-2 cell monolayers. | Q43067512 |
| | Pathogenesis of type 1 diabetes: implications for incidence trends | Q43791624 |
| | The Environmental Determinants of Diabetes in the Young (TEDDY) study: study design | Q45185347 |
| | Beta-cell destruction may be a late consequence of the autoimmune process in nonobese diabetic mice | Q46787541 |
| | Compromised gut microbiota networks in children with anti-islet cell autoimmunity | Q46922105 |
| | High temporal and inter-individual variation detected in the human ileal microbiota | Q48064015 |
| | An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota. | Q48516420 |
| | The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. | Q51221306 |
| | Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse. | Q51369994 |
| | A maternal gluten-free diet reduces inflammation and diabetes incidence in the offspring of NOD mice. | Q53059497 |
| | Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. | Q54468190 |
| | Immune response to glutamic acid decarboxylase correlates with insulitis in non-obese diabetic mice. | Q55066037 |
| | Sex differences in autoimmune disease | Q55970264 |
| | Incidence of Type 1 Diabetes in Finland | Q56637647 |
| | Establishment of the intestinal microbiota and its role for atopic dermatitis in early childhood | Q56968869 |
| | Standard of hygiene and immune adaptation in newborn infants | Q57197922 |
| | Identification and mapping to chromosome 1 of a susceptibility locus for periinsulitis in non-obese diabetic mice | Q57782997 |
| | Altered early infant gut microbiota in children developing allergy up to 5 years of age | Q58590854 |
| | Potential role of the intestinal microbiota of the mother in neonatal immune education | Q61940998 |
| | Early seroconversion and rapidly increasing autoantibody concentrations predict prepubertal manifestation of type 1 diabetes in children at genetic risk | Q62587873 |
| | Ontogeny of islet cell antibodies, insulin autoantibodies and insulitis in the non-obese diabetic mouse | Q68153040 |
| | Feasibility of genetic and immunological prediction of type I diabetes in a population-based birth cohort | Q73795603 |
| | Genetic control of diabetes progression | Q74045636 |
| | The first signs of beta-cell autoimmunity appear in infancy in genetically susceptible children from the general population: the Finnish Type 1 Diabetes Prediction and Prevention Study | Q74619069 |
| | Influence of mother's intestinal microbiota on gut colonization in the infant | Q85064465 |
| | The impact of perinatal immune development on mucosal homeostasis and chronic inflammation | Q95421092 |
| | The gut microbiota--masters of host development and physiology | Q28286102 |
| | From lifetime to evolution: timescales of human gut microbiota adaptation | Q28652725 |
| | Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering | Q28740773 |
| | Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB | Q29547254 |
| | Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns | Q29547261 |
| | Bacterial community variation in human body habitats across space and time | Q29547432 |
| | Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences | Q29615050 |
| | Environmental biodiversity, human microbiota, and allergy are interrelated | Q30052290 |
| | Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section | Q30221761 |
| | Identification of an MHC class I-restricted autoantigen in type 1 diabetes by screening an organ-specific cDNA library. | Q30763625 |
| | Exposure to environmental microorganisms and childhood asthma | Q31000265 |
| | Cohabiting family members share microbiota with one another and with their dogs | Q31115660 |
| | IMG/M: a data management and analysis system for metagenomes | Q31132895 |
| | Cesarean delivery may affect the early biodiversity of intestinal bacteria | Q33361901 |
| | Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults | Q33464636 |
| | Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers | Q33497510 |
| | Developmental microbial ecology of the neonatal gastrointestinal tract | Q33610632 |
| | Relating the metatranscriptome and metagenome of the human gut. | Q33730723 |
| | Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20. | Q33786301 |
| | The incidence of type-1 diabetes in NOD mice is modulated by restricted flora not germ-free conditions | Q33833767 |
| | The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei | Q33914240 |
| | Comparison of the gut microbiotas of healthy adult twins living in South Korea and the United States | Q34004511 |
| | Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes | Q34063601 |
| | Inflammatory tendencies and overproduction of IL-17 in the colon of young NOD mice are counteracted with diet change | Q34082845 |
| | The 'hygiene hypothesis' for autoimmune and allergic diseases: an update | Q34111851 |
| | Diabetes and gender | Q34155817 |
| | Compositional and functional features of the gastrointestinal microbiome and their effects on human health | Q34274976 |
| | Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities | Q34311700 |
| | Evaluation of 16S rDNA-based community profiling for human microbiome research | Q34312366 |
| | Gut metagenome in European women with normal, impaired and diabetic glucose control | Q34347521 |
| | The function of our microbiota: who is out there and what do they do? | Q34392557 |
| | Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing | Q34412286 |
| | Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study | Q34431258 |
| | MOCAT: a metagenomics assembly and gene prediction toolkit | Q34452175 |
| | The gut microbiota modulates glycaemic control and serum metabolite profiles in non-obese diabetic mice | Q34497283 |
| | Dietary Intervention in Infancy and Later Signs of Beta-Cell Autoimmunity | Q34567034 |
| | FANTOM: Functional and taxonomic analysis of metagenomes | Q34572424 |
| | Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study | Q34596660 |
| | Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes | Q34668698 |
| | Human milk glycobiome and its impact on the infant gastrointestinal microbiota | Q34714658 |
| | Meta-analyses of studies of the human microbiota | Q34824829 |
| | Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes | Q34996838 |
| | Primary dietary intervention study to reduce the risk of islet autoimmunity in children at increased risk for type 1 diabetes: the BABYDIET study | Q35043312 |
| | Naturally transmitted segmented filamentous bacteria segregate with diabetes protection in nonobese diabetic mice. | Q35105043 |
| | The intestinal microbiome in type 1 diabetes | Q35120481 |
| | Long term effect of gut microbiota transfer on diabetes development | Q35157830 |
| | The gut microbiota and its role in the development of allergic disease: a wider perspective | Q35158619 |
| | The placenta harbors a unique microbiome | Q35171983 |
| | Aberrant gut microbiota composition at the onset of type 1 diabetes in young children | Q35188386 |
| | Mode of delivery shapes gut colonization pattern and modulates regulatory immunity in mice | Q35192585 |
| | The impact of microbiota on brain and behavior: mechanisms & therapeutic potential | Q35201615 |
| | Fermentable fibres condition colon microbiota and promote diabetogenesis in NOD mice. | Q35207919 |
| | Conducting a microbiome study | Q35208886 |
| | The small intestine microbiota, nutritional modulation and relevance for health | Q35325485 |
| | The 6 year incidence of diabetes-associated autoantibodies in genetically at-risk children: the TEDDY study | Q35371094 |
| | Peritoneal cavity is a route for gut-derived microbial signals to promote autoimmunity in non-obese diabetic mice | Q35437815 |
| | The gut microbiota and inflammatory noncommunicable diseases: associations and potentials for gut microbiota therapies | Q35539468 |
| | The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes | Q35557877 |
| | Helsinki alert of biodiversity and health | Q35612185 |
| | Sequencing and beyond: integrating molecular 'omics' for microbial community profiling | Q35615383 |
| | Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes | Q35661927 |
| | Animal models have little to teach us about type 1 diabetes: 1. In support of this proposal | Q35920996 |
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | type-1 diabetes | Q124407 |
| P304 | page(s) | 154-167 | |
| P577 | publication date | 2016-01-04 | |
| P1433 | published in | Nature Reviews Endocrinology | Q2079257 |
| P1476 | title | The role of the intestinal microbiota in type 1 diabetes mellitus | |
| P478 | volume | 12 | |