Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

scientific article published on 15 January 2016

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1186/S12864-016-2378-Y
P932PMC publication ID4714440
P698PubMed publication ID26769043
P5875ResearchGate publication ID290606440

P50authorHenry T NguyenQ86166811
Trupti JoshiQ42306087
Babu ValliyodanQ54993895
P2093author name stringLi Lin
Dong Xu
Li Song
Yongqin Wang
Jiaojiao Wang
Jinrong Wan
Silvas Prince
Joao V Maldonado dos Santos
P2860cites workStrigolactones suppress adventitious rooting in Arabidopsis and peaQ61988972
Salt tolerance-related protein STO binds to a Myb transcription factor homologue and confers salt tolerance in ArabidopsisQ73790001
Water stress enhances beta-amylase activity in cucumber cotyledonsQ74156197
Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stressQ79292878
TopHat: discovering splice junctions with RNA-SeqQ24655505
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodQ25938999
Quantifying similarity between motifsQ27499384
Fast gapped-read alignment with Bowtie 2Q27860699
Primer3 on the WWW for general users and for biologist programmersQ27861030
Systematic determination of genetic network architectureQ28138580
Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breedingQ28660696
De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicusQ28728710
Differential analysis of gene regulation at transcript resolution with RNA-seqQ29614490
Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zoneQ30881988
Clustering approaches to identifying gene expression patterns from DNA microarray data.Q31152695
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.Q32038350
The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signalingQ33334673
Ethylene regulates root growth through effects on auxin biosynthesis and transport-dependent auxin distribution.Q33344273
Physiological effects of the synthetic strigolactone analog GR24 on root system architecture in Arabidopsis: another belowground role for strigolactones?Q33350187
The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.Q33367745
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, MaizeQ33434107
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in riceQ33846714
DREME: motif discovery in transcription factor ChIP-seq dataQ33890212
Genome expression profile analysis reveals important transcripts in maize roots responding to the stress of heavy metal Pb.Q34322372
Differential gene expression in soybean leaf tissues at late developmental stages under drought stress revealed by genome-wide transcriptome analysisQ34493776
GmGBP1, a homolog of human ski interacting protein in soybean, regulates flowering and stress tolerance in ArabidopsisQ34578731
Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage.Q35060260
Opposite metabolic responses of shoots and roots to droughtQ35372890
Comparisons of the Effects of Elevated Vapor Pressure Deficit on Gene Expression in Leaves among Two Fast-Wilting and a Slow-Wilting SoybeanQ35795445
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in ArabidopsisQ35964795
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stressQ36300647
Understanding regulatory networks and engineering for enhanced drought tolerance in plantsQ36398942
Regulatory metabolic networks in drought stress responsesQ36806060
Complexity and coordination of root growth at low water potentials: recent advances from transcriptomic and proteomic analysesQ37628758
???Q28775788
'Omics' analyses of regulatory networks in plant abiotic stress responsesQ37676553
Abiotic and biotic stresses and changes in the lignin content and composition in plantsQ37727374
Strigolactones are regulators of root developmentQ37884530
Galactinol and raffinose constitute a novel function to protect plants from oxidative damage.Q38290617
Expression of StMYB1R-1, a Novel Potato Single MYB-Like Domain Transcription Factor, Increases Drought ToleranceQ38480171
The AINTEGUMENTA gene of Arabidopsis required for ovule and female gametophyte development is related to the floral homeotic gene APETALA2.Q38562784
Phenotyping soybean plants transformed with rd29A:AtDREB1A for drought tolerance in the greenhouse and fieldQ38966688
Photosynthetic response of transgenic soybean plants, containing an Arabidopsis P5CR gene, during heat and drought stressQ38966872
Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thalianaQ38973695
Gene expression profiling of soybean leaves and roots under salt, saline-alkali and drought stress by high-throughput Illumina sequencingQ38998689
Effect of drought stress on lipid metabolism in the leaves of Arabidopsis thaliana (ecotype Columbia)Q39023292
Comparative analysis of root transcriptomes from two contrasting drought-responsive Williams 82 and DT2008 soybean cultivars under normal and dehydration conditions.Q39038886
ATDOF5.8 protein is the upstream regulator of ANAC069 and is responsive to abiotic stress.Q39061372
Arabidopsis CBF1 overexpression induces COR genes and enhances freezing toleranceQ39099110
Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factorQ39123184
Transgenic Arabidopsis plants expressing the type 1 inositol 5-phosphatase exhibit increased drought tolerance and altered abscisic acid signalingQ39349790
Molecular, anatomical and physiological properties of a genetically modified soybean line transformed with rd29A:AtDREB1A for the improvement of drought toleranceQ39362292
Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wiltingQ39369226
A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of ArabidopsisQ39439045
Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidanceQ39458116
Genetic manipulation of proline accumulation influences the concentrations of other amino acids in soybean subjected to simultaneous drought and heat stressQ39464966
Stress-responsive zinc finger gene ZPT2-3 plays a role in drought tolerance in petuniaQ39496421
Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thalianaQ39505609
Transcriptional responses to drought stress in root and leaf of chickpea seedlingQ39576562
Programmed proteome response for drought avoidance/tolerance in the root of a C(3) xerophyte (wild watermelon) under water deficits.Q39617546
Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density.Q39619254
Cytokinin as a mediator for regulating root system architecture in response to environmental cuesQ41900003
Genome-wide identification and transcription analysis of soybean carotenoid oxygenase genes during abiotic stress treatmentsQ44657895
beta-Amylase induction and the protective role of maltose during temperature shockQ44973394
Unique and overlapping expression patterns among the Arabidopsis 1-amino-cyclopropane-1-carboxylate synthase gene family membersQ45091388
Comparative metabolic profiling reveals secondary metabolites correlated with soybean salt toleranceQ46248570
Hormone balance and abiotic stress tolerance in crop plantsQ46390148
RNA interference of Arabidopsis beta-amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stressQ46810967
Stage of Development Descriptions for Soybeans, Glycine Max (L.) Merrill1Q56094582
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
RNA sequencingQ2542347
P304page(s)57
P577publication date2016-01-15
P1433published inBMC GenomicsQ15765854
P1476titleGenome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions
P478volume17

Reverse relations

cites work (P2860)
Q47099773Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Q36859673Comprehensive Analysis and Expression Profiling of the OsLAX and OsABCB Auxin Transporter Gene Families in Rice (Oryza sativa) under Phytohormone Stimuli and Abiotic Stresses
Q36665606Comprehensive Analysis of the Soybean (Glycine max) GmLAX Auxin Transporter Gene Family
Q57807553Comprehensive transcriptome analysis reveals genes in response to water deficit in the leaves of Saccharum narenga (Nees ex Steud.) hack
Q33799824Drought Stress Causes a Reduction in the Biosynthesis of Ascorbic Acid in Soybean Plants.
Q26741400Drought Stress Responses in Soybean Roots and Nodules
Q33883414Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Q39627329Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance
Q91151912Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development
Q92313763Halotolerant Rhizobacterial Strains Mitigate the Adverse Effects of NaCl Stress in Soybean Seedlings
Q99604182Identifying key regulatory genes of maize root growth and development by RNA sequencing
Q94547491Integration of sRNA, degradome, transcriptome analysis and functional investigation reveals gma-miR398c negatively regulates drought tolerance via GmCSDs and GmCCS in transgenic Arabidopsis and soybean
Q44169253Lipidomics Unravels the Role of Leaf Lipids in Thyme Plant Response to Drought Stress
Q57794696OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots
Q51415600Overexpression of OsNAC14 Improves Drought Tolerance in Rice.
Q28559479Small RNA profiles in soybean primary root tips under water deficit
Q37356107Soybean TIP Gene Family Analysis and Characterization of GmTIP1;5 and GmTIP2;5 Water Transport Activity
Q41861823Transcriptome analysis uncovers key regulatory and metabolic aspects of soybean embryonic axes during germination
Q91616842Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress
Q89976677Variation in Terpene Profiles of Thymus vulgaris in Water Deficit Stress Response

Search more.