Comprehensive transcriptome analysis reveals genes in response to water deficit in the leaves of Saccharum narenga (Nees ex Steud.) hack

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Comprehensive transcriptome analysis reveals genes in response to water deficit in the leaves of Saccharum narenga (Nees ex Steud.) hack is …
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scholarly articleQ13442814

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P356DOI10.1186/S12870-018-1428-9
P932PMC publication ID6195978
P698PubMed publication ID30342477

P50authorXihui LiuQ92435989
P2093author name stringHui Zhou
Yangrui Li
Ronghua Zhang
Hongwei Tan
Jinju Wei
Huiping Ou
Yiyun Gui
P2860cites workGapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
HMMER web server: interactive sequence similarity searchingQ24603071
Molecular Responses to Water DeficitQ24672484
RNAmmer: consistent and rapid annotation of ribosomal RNA genesQ24675768
Fast gapped-read alignment with Bowtie 2Q27860699
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
SignalP 4.0: discriminating signal peptides from transmembrane regionsQ29547202
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysisQ29615950
eggNOG v4.0: nested orthology inference across 3686 organismsQ30002339
Signal transduction-related responses to phytohormones and environmental challenges in sugarcaneQ33278150
Gene Expression and Signal Transduction in Water-Stress ResponseQ63640936
Expression of a Late Embryogenesis Abundant Protein Gene, HVA1, from Barley Confers Tolerance to Water Deficit and Salt Stress in Transgenic RiceQ74776039
Identification of drought-response genes and a study of their expression during sucrose accumulation and water deficit in sugarcane culmsQ33791404
Comprehensive transcriptomics and proteomics analyses of pollinated and parthenocarpic litchi (Litchi chinensis Sonn.) fruits during early developmentQ33905929
Programmed cell death in development and defenseQ34128901
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativaQ34132584
Programmed cell death in plant reproductionQ34152257
Deep sequencing of RNA from three different extracellular vesicle (EV) subtypes released from the human LIM1863 colon cancer cell line uncovers distinct miRNA-enrichment signaturesQ35351470
Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditionsQ35894636
Genes commonly regulated by water-deficit stress in Arabidopsis thalianaQ35901668
Identification of Arbuscular Mycorrhiza (AM)-Responsive microRNAs in TomatoQ35986067
Identification of sense and antisense transcripts regulated by drought in sugarcane.Q36013502
PsRobot: a web-based plant small RNA meta-analysis toolboxQ36088572
Transcriptome Analysis of Taxillusi chinensis (DC.) Danser Seeds in Response to Water LossQ36238217
Cold, salinity and drought stresses: an overviewQ36322993
Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stressesQ36466575
Gene networks involved in drought stress response and toleranceQ36639430
MicroRNAs and drought responses in sugarcaneQ38371654
SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomesQ38640368
Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line.Q38727601
Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) rootsQ38978888
Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in ArabidopsisQ39323774
Expression profile of maize microRNAs corresponding to their target genes under drought stressQ39577385
Production of reactive oxygen species, alteration of cytosolic ascorbate peroxidase, and impairment of mitochondrial metabolism are early events in heat shock-induced programmed cell death in tobacco Bright-Yellow 2 cellsQ40578466
Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.).Q41940672
RNA-Seq gene expression estimation with read mapping uncertaintyQ42918161
The water-deficit stress- and red-rot-related genes in sugarcane.Q43265879
Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stressQ44177229
Comparative transcriptional profiling of placenta and endosperm in developing maize kernels in response to water deficitQ44315464
Loss of TIP1;1 aquaporin in Arabidopsis leads to cell and plant deathQ45177801
Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genomeQ46159108
Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress.Q47788618
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root developmentQ48142660
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesedgeRQ113334690
P433issue1
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
Saccharum narengaQ3460837
P304page(s)250
P577publication date2018-10-20
P1433published inBMC Plant BiologyQ15760766
P1476titleComprehensive transcriptome analysis reveals genes in response to water deficit in the leaves of Saccharum narenga (Nees ex Steud.) hack
P478volume18

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cites work (P2860)
Q91811271Comparative Transcriptome Analysis between a Novel Allohexaploid Cotton Progeny CMS Line LD6A and Its Maintainer Line LD6B
Q91812642Comparative Transcriptome Profiling of Resistant and Susceptible Sugarcane Cultivars in Response to Infection by Xanthomonas albilineans
Q90634748RNA-Seq analysis of Clerodendrum inerme (L.) roots in response to salt stress
Q90230444Sugarcane Omics: An Update on the Current Status of Research and Crop Improvement

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