Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues

scientific article published on 12 March 2012

Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/CYTO.A.22034
P932PMC publication ID3331924
P698PubMed publication ID22411907
P5875ResearchGate publication ID221697721

P2093author name stringM Shane Hutson
Xiaoyan Ma
Holley E Lynch
David N Mashburn
P2860cites workDRhoGEF2 regulates cellular tension and cell pulsations in the Amnioserosa during Drosophila dorsal closureQ27322832
CellProfiler: free, versatile software for automated biological image analysisQ28286175
Watersheds in digital spaces: an efficient algorithm based on immersion simulationsQ29013909
User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliabilityQ29615939
Multiple forces contribute to cell sheet morphogenesis for dorsal closure in Drosophila.Q30859086
A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope imagesQ33291830
Probing embryonic tissue mechanics with laser hole drillingQ33438264
Pulsed forces timed by a ratchet-like mechanism drive directed tissue movement during dorsal closure.Q33476024
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data setsQ33540985
An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopyQ33722050
Reconstructing embryonic developmentQ33765699
CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.Q34130316
Quantitative in vivo microscopy: the return from the 'omics'.Q36561317
Cell population tracking and lineage construction with spatiotemporal contextQ37161717
Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programmingQ37313633
Feature point tracking and trajectory analysis for video imaging in cell biology.Q40393446
Forces for morphogenesis investigated with laser microsurgery and quantitative modelingQ44307030
The PAR complex regulates pulsed actomyosin contractions during amnioserosa apical constriction in Drosophila.Q47072198
Cell flow reorients the axis of planar polarity in the wing epithelium of DrosophilaQ51900604
Mechanical aspects of developmental biology: perspectives on growth and form in the (post)-genomic age. PrefaceQ51959864
Interactive 3D editing tools for image segmentationQ52007233
Real-time imaging of cell-cell adherens junctions reveals that Drosophila mesoderm invagination begins with two phases of apical constriction of cellsQ52585685
Cytoskeletal dynamics and supracellular organisation of cell shape fluctuations during dorsal closureQ52707620
P433issue5
P304page(s)409-418
P577publication date2012-03-12
P1433published inCytometry Part AQ15764023
P1476titleEnabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissues
P478volume81

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cites work (P2860)
Q35021953Alpha-lipoic acid-loaded nanostructured lipid carrier: sustained release and biocompatibility to HaCaT cells in vitro
Q34792282Apical oscillations in amnioserosa cells: basolateral coupling and mechanical autonomy
Q38687801Asymmetrically deployed actomyosin-based contractility generates a boundary between developing leg segments in Drosophila
Q35185971CellFIT: a cellular force-inference toolkit using curvilinear cell boundaries
Q30559023Cellular mechanics of germ band retraction in Drosophila
Q52596342Coordination of Receptor Tyrosine Kinase Signaling and Interfacial Tension Dynamics Drives Radial Intercalation and Tube Elongation
Q36459929EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics
Q38872740Inferring cellular forces from image stacks
Q64230240Inferring statistical properties of 3D cell geometry from 2D slices
Q89967570Irradiation Induces Epithelial Cell Unjamming
Q52668776Mechanical forces drive neuroblast morphogenesis and are required for epidermal closure
Q36586007Pathway to a phenocopy: Heat stress effects in early embryogenesis
Q27308138Patterning of wound-induced intercellular Ca(2+) flashes in a developing epithelium
Q36570768Practical aspects of the cellular force inference toolkit (CellFIT).
Q92069903Quantitative dynamics of VE-cadherin at endothelial cell junctions at a glance: basic requirements and current concepts
Q30830566Robust cell tracking in epithelial tissues through identification of maximum common subgraphs.
Q38808061SEGGA: a toolset for rapid automated analysis of epithelial cell polarity and dynamics.
Q35465465Segmentation and tracking of adherens junctions in 3D for the analysis of epithelial tissue morphogenesis
Q35193899Shroom3 functions downstream of planar cell polarity to regulate myosin II distribution and cellular organization during neural tube closure
Q64994132Spinal neural tube closure depends on regulation of surface ectoderm identity and biomechanics by Grhl2.
Q43613473The CellBorderTracker, a novel tool to quantitatively analyze spatiotemporal endothelial junction dynamics at the subcellular level
Q52325935The non-canonical Wnt-PCP pathway shapes the caudal neural plate
Q100958727Unraveling spatial cellular pattern by computational tissue shuffling
Q93075246Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach

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