EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics

scientific article

EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.DEVCEL.2015.12.012
P932PMC publication ID4712040
P698PubMed publication ID26766446
P5875ResearchGate publication ID290175697

P50authorNicolas TaponQ39663297
Simon RestrepoQ52733547
Konrad BaslerQ21031911
P2093author name stringAlexander L Tournier
Andreas Hoppe
Yanlan Mao
Lorenzo Gatti
Davide Heller
P2860cites workA high-throughput template for optimizingDrosophilaorgan culture with response-surface methodsQ39215468
On the origins of the mitotic shift in proliferating cell layersQ40399401
Differential proliferation rates generate patterns of mechanical tension that orient tissue growthQ42092367
Planar polarization of the atypical myosin Dachs orients cell divisions in DrosophilaQ42573858
Cell lineage relationships in the imaginal wing disc of Drosophila melanogasterQ45052398
The mechanical anisotropy in a tissue promotes ordering in hexagonal cell packing.Q45087097
A global pattern of mechanical stress polarizes cell divisions and cell shape in the growing Drosophila wing discQ45354380
Patterned gene expression directs bipolar planar polarity in DrosophilaQ47071305
Integrating force-sensing and signaling pathways in a model for the regulation of wing imaginal disc size.Q47295375
Myosin-dependent junction remodelling controls planar cell intercalation and axis elongationQ47363099
Cell flow reorients the axis of planar polarity in the wing epithelium of DrosophilaQ51900604
Myosin II regulates complex cellular arrangement and epithelial architecture in Drosophila.Q51973234
The cell graphs of cancerQ51993735
Gastrulation in Drosophila: the formation of the ventral furrow and posterior midgut invaginationsQ52447497
Live-cell delamination counterbalances epithelial growth to limit tissue overcrowdingQ52736357
External forces control mitotic spindle positioningQ60228249
Cell division and the maintenance of epithelial orderQ26858973
Tissue tectonics: morphogenetic strain rates, cell shape change and intercalationQ27313958
Developmental compartmentalisation of the wing disk of DrosophilaQ28242316
A pyramid approach to subpixel registration based on intensityQ29614713
Live imaging of Drosophila imaginal disc developmentQ30496109
Three-dimensional epithelial morphogenesis in the developing Drosophila eggQ30582653
Quantitative 4D analyses of epithelial folding during Drosophila gastrulationQ30592610
The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packingQ33310528
Automated tracking of stem cell lineages of Arabidopsis shoot apex using local graph matchingQ33348420
Elastic domains regulate growth and organogenesis in the plant shoot apical meristemQ33353134
Nature and anisotropy of cortical forces orienting Drosophila tissue morphogenesisQ33382061
Mechanical feedback as a possible regulator of tissue growthQ33927284
Multiview light-sheet microscope for rapid in toto imaging.Q34032180
Determining the role of patterned cell proliferation in the shape and size of the Drosophila wingQ34064181
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Icy: an open bioimage informatics platform for extended reproducible research.Q34284821
Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epibolyQ34383993
Emergence of homeostatic epithelial packing and stress dissipation through divisions oriented along the long cell axis.Q34473469
The emergence of geometric order in proliferating metazoan epitheliaQ34555918
Influence of cell geometry on division-plane positioningQ34620834
CellFIT: a cellular force-inference toolkit using curvilinear cell boundariesQ35185971
Segmentation and tracking of adherens junctions in 3D for the analysis of epithelial tissue morphogenesisQ35465465
MorphoGraphX: A platform for quantifying morphogenesis in 4DQ35574746
3D high- and super-resolution imaging using single-objective SPIM.Q35626663
Enabling user-guided segmentation and tracking of surface-labeled cells in time-lapse image sets of living tissuesQ35903291
Control of the mitotic cleavage plane by local epithelial topologyQ36378980
Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis.Q36436786
Orchestrating size and shape during morphogenesisQ36997696
From the Cover: Directed, efficient, and versatile modifications of the Drosophila genome by genomic engineeringQ37208620
Mitotic Spindle Orientation in Asymmetric and Symmetric Cell Divisions during Animal DevelopmentQ37901788
P4510describes a project that usesImageJQ1659584
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectimage analysisQ860755
open-source softwareQ1130645
P1104number of pages14
P304page(s)103-116
P577publication date2016-01-01
P1433published inDevelopmental CellQ1524277
P1476titleEpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics
P478volume36

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