Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio).

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Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio). is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1004200187
P356DOI10.1186/S12864-016-2981-Y
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s12864-016-2981-y
P932PMC publication ID4982206
P698PubMed publication ID27519738

P50authorIvan MihaljevicQ86150677
Roko ZajaQ95987106
Tvrtko SmitalQ96237812
P2093author name stringMarta Popovic
P2860cites workMUSCLE: a multiple sequence alignment method with reduced time and space complexityQ21284290
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Identification of a new urate and high affinity nicotinate transporter, hOAT10 (SLC22A13)Q24321313
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Organic anion and cation transporters occur in pairs of similar and similarly expressed genesQ28198250
Organic anion transporting polypeptides of the OATP/ SLC21 family: phylogenetic classification as OATP/ SLCO superfamily, new nomenclature and molecular/functional propertiesQ28212603
The solute carrier families have a remarkably long evolutionary history with the majority of the human families present before divergence of Bilaterian speciesQ28301865
Blood-brain barrier transport of pramipexole, a dopamine D2 agonistQ40169922
Characterization of ochratoxin A transport by human organic anion transportersQ40773388
Potential pharmacokinetic role of organic cation transporters in modulating the transcorneal penetration of its substrates administered topicallyQ41891370
An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases.Q42667238
Interaction of environmental contaminants with zebrafish organic anion transporting polypeptide, Oatp1d1 (Slco1d1).Q42704592
OCTN2 is associated with carnitine transport capacity of rat skeletal musclesQ43135288
Drug transporter and cytochrome P450 mRNA expression in human ocular barriers: implications for ocular drug dispositionQ43452684
Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): Phylogenetic analysis and tissue distributionQ43577047
Cationic amino acids involved in dicarboxylate binding of the flounder renal organic anion transporterQ43741332
The human OCTN1 (SLC22A4) reconstituted in liposomes catalyzes acetylcholine transport which is defective in the mutant L503F associated to the Crohn's disease.Q43945085
Carnitine/xenobiotics transporters in the human mammary gland epithelia, MCF12A.Q46728936
Characterization of Organic Anion Transporter 2 (SLC22A7): A Highly Efficient Transporter for Creatinine and Species-Dependent Renal Tubular Expression.Q46738624
Upregulation of mammary gland OCTNs maintains carnitine homeostasis in suckling infants.Q51383637
PAH-alpha-KG countertransport stimulates PAH uptake and net secretion in isolated snake renal tubulesQ68059084
Sodium-coupled organic anion transport by Cancer borealis urinary bladderQ68864252
Hormonal regulation of organic cation transporter OCT2 expression in rat kidneyQ73794772
Regional distribution of solute carrier mRNA expression along the human intestinal tractQ79551075
Evolutionary Analysis and Classification of OATs, OCTs, OCTNs, and Other SLC22 Transporters: Structure-Function Implications and Analysis of Sequence MotifsQ28550639
Molecular cloning and characterization of a novel liver-specific transport proteinQ28568599
Lactation stage-dependent expression of transporters in rat whole mammary gland and primary mammary epithelial organoidsQ28572339
Novel human cDNAs homologous to Drosophila Orct and mammalian carnitine transportersQ28624134
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternativeQ29547242
The zebrafish reference genome sequence and its relationship to the human genomeQ29616593
Organic cation transporter 2 mediates cisplatin-induced oto- and nephrotoxicity and is a target for protective interventionsQ30476563
Processing of gene expression data generated by quantitative real-time RT-PCR.Q30699578
Q-Gene: processing quantitative real-time RT-PCR dataQ30813293
Expression of organic cation transporters OCT1 (SLC22A1) and OCT3 (SLC22A3) is affected by genetic factors and cholestasis in human liverQ33480591
Identification of a novel organic anion transporter mediating carnitine transport in mouse liver and kidneyQ33544992
Isolation of a family of organic anion transporters from human liver and kidneyQ33944666
Gene expression levels and immunolocalization of organic ion transporters in the human kidney.Q34120401
Novel slc22 transporter homologs in fly, worm, and human clarify the phylogeny of organic anion and cation transportersQ34309854
Skin cells and tissue are capable of using L-ergothioneine as an integral component of their antioxidant defense systemQ34980761
Organic cation transportersQ35163075
Pharmacological and physiological functions of the polyspecific organic cation transporters: OCT1, 2, and 3 (SLC22A1-3).Q35566946
Organic cation transporters modulate the uptake and cytotoxicity of picoplatin, a third-generation platinum analogue.Q35671906
The flounder organic anion transporter fOat has sequence, function, and substrate specificity similarity to both mammalian Oat1 and Oat3.Q35699239
Effect of genetic variation in the organic cation transporter 1 (OCT1) on metformin actionQ35762110
OCT2 and MATE1 provide bidirectional agmatine transportQ36110018
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Organic anion transporters of the SLC22 family: biopharmaceutical, physiological, and pathological rolesQ36716533
Polyspecific organic cation transporters: structure, function, physiological roles, and biopharmaceutical implicationsQ36808739
Profiling SLCO and SLC22 genes in the NCI-60 cancer cell lines to identify drug uptake transportersQ37002730
Analysis of a large cluster of SLC22 transporter genes, including novel USTs, reveals species-specific amplification of subsets of family membersQ37265749
Molecular characterization of zebrafish Oatp1d1 (Slco1d1), a novel organic anion-transporting polypeptideQ37333766
Introduction of Organic Anion Transporters (SLC22A) and a Regulatory Mechanism by CaveolinsQ37489222
Organic cation transporters (OCTs, MATEs), in vitro and in vivo evidence for the importance in drug therapyQ37811962
Substrate recognition and translocation by polyspecific organic cation transportersQ37824858
Pharmacological and pathophysiological roles of carnitine/organic cation transporters (OCTNs: SLC22A4, SLC22A5 and Slc22a21).Q38041054
The SLC22 family with transporters of organic cations, anions and zwitterionsQ38090782
Renal secretion of uric acid by organic anion transporter 2 (OAT2/SLC22A7) in human.Q39734079
Functional effects of protein sequence polymorphisms in the organic cation/ergothioneine transporter OCTN1 (SLC22A4).Q39808863
Involvement of OCTN2 in the transport of acetyl-L-carnitine across the inner blood-retinal barrierQ39812108
Organic anion transporter OAT1 is involved in renal handling of citrullineQ39858796
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectDanio rerioQ169444
P304page(s)626
P577publication date2016-08-12
P1433published inBMC GenomicsQ15765854
P1476titlePhylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio).
P478volume17

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cites work (P2860)
Q92719362A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression
Q89634280Effect of Cholesterol on the Organic Cation Transporter OCTN1 (SLC22A4)
Q55259343Importance of Toxicokinetics to Assess the Utility of Zebrafish Larvae as Model for Psychoactive Drug Screening Using Meta-Chlorophenylpiperazine (mCPP) as Example.
Q92330328Salinity stress-induced differentially expressed miRNAs and target genes in sea cucumbers Apostichopus japonicus
Q88589744Visualizing the Brain's Astrocytes with Diverse Chemical Scaffolds

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