EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

scientific article

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/NMETH.3541
P932PMC publication ID4589481
P698PubMed publication ID26280328

P50authorNathaniel EcholsQ28036193
Paul D. AdamsQ30504798
James S FraserQ47451343
Benjamin A BaradQ85913828
P2093author name stringFrank DiMaio
Yifan Cheng
Ray Yu-Ruei Wang
P2860cites workA smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressionsQ24610334
Rapid model building of alpha-helices in electron-density mapsQ24643501
MolProbity: all-atom structure validation for macromolecular crystallographyQ24649111
PHENIX: a comprehensive Python-based system for macromolecular structure solutionQ24654617
The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distributionQ27639782
Specific radiation damage to acidic residues and its relation to their chemical and structural environmentQ27643494
Cryo-EM model validation using independent map reconstructionsQ27677412
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.Q27677990
Molecular architecture of a eukaryotic translational initiation complexQ27680550
Structure of the TRPV1 ion channel determined by electron cryo-microscopyQ27680759
Protein structural ensembles are revealed by redefining X-ray electron density noiseQ27681046
Atomic model of the F 420 -reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detectorQ27681908
Structure of the Yeast Mitochondrial Large Ribosomal SubunitQ27682617
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetineQ27684255
Structure of  -galactosidase at 3.2-A resolution obtained by cryo-electron microscopyQ27684849
Stereochemistry of polypeptide chain configurationsQ28190300
Rotamer libraries in the 21st centuryQ28216942
Outcome of the first electron microscopy validation task force meetingQ28730539
Prevention of overfitting in cryo-EM structure determinationQ29614287
The penultimate rotamer libraryQ29615941
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinementQ30300619
Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models.Q30363422
Motif-directed flexible backbone design of functional interactionsQ33453616
Single particle electron cryo-microscopy of a mammalian ion channelQ34250827
Automated electron-density sampling reveals widespread conformational polymorphism in proteinsQ34283536
Cross-validation in cryo-EM-based structural modelingQ36895817
A glimpse of structural biology through X-ray crystallographyQ38270533
Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructionsQ41606440
Automated nucleic acid chain tracing in real timeQ42987331
The penultimate rotamer libraryQ56874662
P433issue10
P921main subjectcryogenic electron microscopyQ5190506
P304page(s)943-946
P577publication date2015-08-17
P1433published inNature MethodsQ680640
P1476titleEMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy
P478volume12

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