Alternative Splicing of Barley Clock Genes in Response to Low Temperature

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Alternative Splicing of Barley Clock Genes in Response to Low Temperature is …
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scholarly articleQ13442814

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P819ADS bibcode2016PLoSO..1168028C
P356DOI10.1371/JOURNAL.PONE.0168028
P932PMC publication ID5154542
P698PubMed publication ID27959947

P50authorRobbie WaughQ78179873
P2093author name stringJohn W S Brown
Craig G Simpson
Cristiane P G Calixto
P2860cites workA physical, genetic and functional sequence assembly of the barley genomeQ22122143
Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clockQ26862641
Circadian Clock Genes Universally Control Key Agricultural TraitsQ26864980
Origin and evolution of spliceosomal intronsQ27498824
Mechanisms of alternative pre-messenger RNA splicingQ28131822
Using Tablet for visual exploration of second-generation sequencing dataQ28262747
Expansion of the eukaryotic proteome by alternative splicingQ29615083
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changesQ30414157
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Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequencyQ34148145
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Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants.Q39093015
Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptomeQ40108675
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequencesQ40156768
Thermoplasticity in the plant circadian clock: how plants tell the time-peratureQ41335948
Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.Q41514063
A chloroplast retrograde signal regulates nuclear alternative splicing.Q41826208
Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genesQ42055670
Analysis Tool Web Services from the EMBL-EBI.Q42265365
A methyl transferase links the circadian clock to the regulation of alternative splicingQ42852303
Effects of deoxynivalenol on content of chloroplast pigments in barley leaf tissuesQ43227970
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defectsQ45812317
Features of evolutionarily conserved alternative splicing events between Brassica and ArabidopsisQ46440958
Removal of retained introns regulates translation in the rapidly developing gametophyte of Marsilea vestitaQ46520668
The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.Q48055297
The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barleyQ48113006
Transcriptome survey reveals increased complexity of the alternative splicing landscape in ArabidopsisQ34185155
Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythmsQ34718029
Detained introns are a novel, widespread class of post-transcriptionally spliced intronsQ34799985
Phytochrome controls alternative splicing to mediate light responses in Arabidopsis.Q34832541
Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis.Q35095176
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteinsQ35130354
Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivityQ35144632
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plantsQ35219067
Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulationQ35271728
Circadian rhythms and post-transcriptional regulation in higher plants.Q35726534
Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barleyQ35837044
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.Q35860653
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.Q35910079
Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasonsQ35991571
Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.Q36080336
Deep sequencing the circadian and diurnal transcriptome of Drosophila brainQ36093890
Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genesQ36112869
Alternative splicing in plants--coming of age.Q36303822
Alternative splicing of pre-messenger RNAs in plants in the genomic era.Q36707492
Modulation of environmental responses of plants by circadian clocks.Q36722475
Upstream ORFs are prevalent translational repressors in vertebratesQ36759525
Temperature perception and signal transduction in plants.Q37157919
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.Q37207163
Evidence for the adaptive significance of circadian rhythmsQ37536273
A role for SR proteins in plant stress responsesQ37831777
Alternative splicing: enhancing ability to cope with stress via transcriptome plasticity.Q37983241
On the physiological significance of alternative splicing events in higher plantsQ38041981
Alternative splicing: a pivotal step between eukaryotic transcription and translationQ38079475
Metabolic regulation of circadian clocksQ38093981
Complexity of the alternative splicing landscape in plants.Q38157823
Alternative splicing at the intersection of biological timing, development, and stress responsesQ38157825
Multiple layers of posttranslational regulation refine circadian clock activity in ArabidopsisQ38183656
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.Q38280470
Widespread inhibition of posttranscriptional splicing shapes the cellular transcriptome following heat shockQ38992207
Temperature-dependent regulation of flowering by antagonistic FLM variants.Q50719657
Genetic dissection of barley morphology and development.Q51895392
How a circadian clock adapts to seasonal decreases in temperature and day length.Q52576490
SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis.Q53147955
The evolutionary landscape of alternative splicing in vertebrate speciesQ56894874
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcriptsQ60543455
A Recently Evolved Alternative Splice Site in the BRANCHED1a Gene Controls Potato Plant ArchitectureQ63443211
Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thalianaQ79317528
Low-temperature and daylength cues are integrated to regulate FLOWERING LOCUS T in barleyQ80935035
Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile CrescentQ81724258
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectalternative mRNA splicing, via spliceosomeQ21114084
barleyQ61665121
P304page(s)e0168028
P577publication date2016-12-13
P1433published inPLOS OneQ564954
P1476titleAlternative Splicing of Barley Clock Genes in Response to Low Temperature
P478volume11

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cites work (P2860)
Q92539261Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane
Q91909688BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
Q92073019Circadian Regulation of the Plant Transcriptome Under Natural Conditions
Q64087751Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
Q64282290Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage
Q51412174Global spatial analysis of Arabidopsis natural variants implicates 5'UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature.
Q52658877How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).

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