Recombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission

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Recombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1005366719
P356DOI10.1186/S12977-015-0222-0
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s12977-015-0222-0
P932PMC publication ID4647327
P698PubMed publication ID26573574
P5875ResearchGate publication ID284165603

P50authorKatherine LuzuriagaQ15877364
Thomas LeitnerQ84143742
Mohan SomasundaranQ123576137
P2093author name stringKeri B Sanborn
P2860cites workVariable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) responseQ21131580
Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patientsQ22242225
Genotypic and phenotypic characterization of HIV-1 patients with primary infectionQ22242245
Adaptive value of sex in microbial pathogensQ22252364
Small amino acid changes in the V3 hypervariable region of gp120 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1Q37239053
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infectionQ37273158
Dynamics of HIV-1 recombination in its natural target cellsQ37356815
Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure.Q37574543
Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS.Q39685176
Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance.Q39868599
Possible involvement of cell fusion and viral recombination in generation of human immunodeficiency virus variants that display dual resistance to AZT and 3TCQ41289281
Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentivirusesQ43449921
A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patientsQ45557943
Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infectionQ45771143
Selective transmission of human immunodeficiency virus type-1 variants from mothers to infantsQ45867857
Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmissionQ47878972
Biological and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmissions in SwedenQ48073755
Some Genetic Aspects of SexQ56235384
Recombination in HIV-1Q57998149
Correlation between HIV sequence evolution, specific immune response and clinical outcome in vertically infected infantsQ61714898
Selection for recombination in a polygenic model – the mechanismQ68346852
Human immunodeficiency virusesQ70136157
Classification of hypotheses on the advantage of amphimixisQ70503887
The evolutionary advantage of recombinationQ24533419
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inferenceQ24811999
Hypermutation of HIV-1 DNA in the Absence of the Vif ProteinQ28204475
APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivoQ28275837
Why sex and recombination?Q28283292
Recombination rate and selection strength in HIV intra-patient evolutionQ28472689
Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1Q28540044
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternativeQ29547242
Recent developments in the MAFFT multiple sequence alignment programQ29547333
Antibody neutralization and escape by HIV-1Q29547345
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree buildingQ29547665
SplitsTree: analyzing and visualizing evolutionary dataQ29617896
The role of recombination in the emergence of a complex and dynamic HIV epidemicQ30387214
Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progressionQ33392723
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infectionQ33825654
Multidimensional epistasis and the disadvantage of sex.Q33947009
Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutralityQ33988303
Timing and order of transmission events is not directly reflected in a pathogen phylogenyQ34064859
Why do RNA viruses recombine?Q34197204
Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineagesQ34362894
A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequencesQ34372546
A simple and robust statistical test for detecting the presence of recombinationQ34588500
Pediatric HIV-1 infection: advances and remaining challengesQ34630043
Pervasive genomic recombination of HIV-1 in vivoQ34645720
Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitorsQ35076953
Genotypic and functional properties of early infant HIV-1 envelopesQ35289861
The molecular clock of HIV-1 unveiled through analysis of a known transmission historyQ35631348
Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of diseaseQ35875709
Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDSQ35895520
Comparison of variable region 3 sequences of human immunodeficiency virus type 1 from infected children with the RNA and DNA sequences of the virus populations of their mothersQ36126775
HIV/AIDS in women: an expanding epidemicQ36157693
Genetic diversity and evolution of retroviruses.Q36188846
Transmission of HIV-1 in the face of neutralizing antibodiesQ37017806
An exploratory algorithm to identify intra-host recombinant viral sequencesQ37042458
P921main subjectHIV transmissionQ49029021
P304page(s)96
P577publication date2015-11-16
P1433published inRetrovirologyQ15793508
P1476titleRecombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission
P478volume12

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cites work (P2860)
Q40040133Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation.
Q64106336Next-generation sequencing of HIV-1 single genome amplicons
Q36684805Phylogenetically resolving epidemiologic linkage.

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