Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network

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Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1001419103
P356DOI10.1186/S12967-015-0718-3
P8608Fatcat IDrelease_mq5zlsvhlraerhzretamppjyom
P932PMC publication ID4650856
P698PubMed publication ID26578390
P5875ResearchGate publication ID283909451

P2093author name stringJie Yang
Jin Wang
Jie Li
Pengping Li
Jiao Yi
Yuebing Hu
P2860cites workPredicting effective microRNA target sites in mammalian mRNAsQ21128766
A note on two problems in connexion with graphsQ21694527
NCBI GEO: archive for functional genomics data sets--updateQ24595691
MATCH: A tool for searching transcription factor binding sites in DNA sequencesQ24677633
Emergence of Scaling in Random NetworksQ27037290
MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemiaQ28260580
Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional propertyQ28477267
Gene targeting reveals a widespread role for the high-mobility-group transcription factor Sox11 in tissue remodelingQ28504616
The large-scale organization of metabolic networksQ29547498
Improvements in survival and clinical benefit with gemcitabine as first-line therapy for patients with advanced pancreas cancer: a randomized trialQ29547565
Evidence for dynamically organized modularity in the yeast protein-protein interaction networkQ29614449
Reverse engineering of regulatory networks in human B cellsQ30004211
TransmiR: a transcription factor-microRNA regulation databaseQ33600597
Loss of membrane localization and aberrant nuclear E-cadherin expression correlates with invasion in pancreatic endocrine tumors.Q51713396
The transcription factor Sox11 is a prognostic factor for improved recurrence-free survival in epithelial ovarian cancer.Q51776835
Epithelial-Mesenchymal Transitions in development and disease: old views and new perspectives.Q51795587
A further step toward an optimal ensemble of classifiers for peptide classification, a case study: HIV protease.Q51835286
Solid pseudopapillary neoplasms of the pancreas show an interruption of the Wnt-signaling pathway and express gene products of 11q.Q52580459
Pleomorphic solid pseudopapillary neoplasm of the pancreas: degenerative change rather than high-grade malignant potential.Q53079425
SOX9 regulates ERBB signalling in pancreatic cancer development.Q53229089
Solid-pseudopapillary tumor of the pancreas.Q53638353
MicroRNA-106b modulates epithelial-mesenchymal transition by targeting TWIST1 in invasive endometrial cancer cell lines.Q54244950
Knockdown of microRNA-21 inhibits proliferation and increases cell death by targeting programmed cell death 4 (PDCD4) in pancreatic ductal adenocarcinoma.Q54401190
Solid-pseudopapillary neoplasms of the pancreas in men and women: do they differ?Q54614754
Membrane loss and aberrant nuclear localization of E-cadherin are consistent features of solid pseudopapillary tumour of the pancreas. An immunohistochemical study using two antibodies recognizing different domains of the E-cadherin moleculeQ57422133
p120 Catenin Reduction and Cytoplasmic Relocalization Leads to Dysregulation of E-Cadherin in Solid Pseudopapillary Tumors of the PancreasQ57422136
Loss of E-cadherin and cytoplasmic-nuclear expression of beta-catenin are the most useful immunoprofiles in the diagnosis of solid-pseudopapillary neoplasm of the pancreasQ81496777
Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimatesQ83752607
A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancerQ84346859
Immunohistochemical evaluation of solid pseudopapillary tumors of the pancreas: the expression pattern of CD99 is highly uniqueQ84579418
The metastasis suppressor SOX11 is an independent prognostic factor for improved survival in gastric cancerQ33636790
TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAsQ33652938
ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experimentsQ33658206
Pathological differential diagnosis of solid-pseudopapillary neoplasm and endocrine tumors of the pancreasQ33688275
Solid-pseudopapillary tumor of the pancreas: a typically cystic carcinoma of low malignant potentialQ33865980
Gene regulation is governed by a core network in hepatocellular carcinoma.Q34252833
Prediction of Protein Structural ClassesQ34297604
Non-coding RNAs as clinical biomarkers for cancer diagnosis and prognosisQ34404162
Genomic loss of tumor suppressor miRNA-204 promotes cancer cell migration and invasion by activating AKT/mTOR/Rac1 signaling and actin reorganizationQ34533814
How microRNA and transcription factor co-regulatory networks affect osteosarcoma cell proliferationQ34979339
Surgical management of solid-pseudopapillary neoplasms of the pancreas (Franz or Hamoudi tumors): a large single-institutional seriesQ35030363
Overexpression of lymphoid enhancer-binding factor 1 (LEF1) in solid-pseudopapillary neoplasms of the pancreasQ35052894
Global microRNA expression profiling uncovers molecular markers for classification and prognosis in aggressive B-cell lymphomaQ35080097
Loss of E-cadherin expression and outcome among patients with resectable pancreatic adenocarcinomas.Q35161198
MicroRNA-10b expression correlates with response to neoadjuvant therapy and survival in pancreatic ductal adenocarcinomaQ35196518
How and when should interactome-derived clusters be used to predict functional modules and protein function?Q35198634
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.Q35254443
The T box transcription factor TBX2 promotes epithelial-mesenchymal transition and invasion of normal and malignant breast epithelial cellsQ36109766
Solid pseudopapillary tumors of the pancreas: review of 718 patients reported in English literatureQ36142542
Inhibition of autophagy and tumor growth in colon cancer by miR-502.Q36173829
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolitesQ36749427
Current diagnosis and management of unusual pancreatic tumorsQ37158075
SOX9: a useful marker for pancreatic ductal lineage of pancreatic neoplasmsQ37621990
Small (≤3 cm) Solid Pseudopapillary Tumors of the Pancreas at Multiphasic Multidetector CTQ37776079
Some remarks on protein attribute prediction and pseudo amino acid compositionQ37822128
MicroRNA: key gene expression regulatorsQ38169346
Upregulation of miR-194 contributes to tumor growth and progression in pancreatic ductal adenocarcinomaQ39036653
miR-204 inhibits epithelial to mesenchymal transition by targeting slug in intrahepatic cholangiocarcinoma cellsQ39053930
miR-204 mediated loss of Myeloid cell leukemia-1 results in pancreatic cancer cell deathQ39097211
Prediction of lysine ubiquitination with mRMR feature selection and analysisQ39789707
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction mapsQ42659943
E-cadherin/beta-catenin and CD10: a limited immunohistochemical panel to distinguish pancreatic endocrine neoplasm from solid pseudopapillary neoplasm of the pancreas on endoscopic ultrasound-guided fine-needle aspirates of the pancreasQ43238417
Surgical management and long-term follow-up of solid pseudopapillary tumor of pancreas: a large series from a single institutionQ43769446
FunPred-1: protein function prediction from a protein interaction network using neighborhood analysis.Q44915158
Characterization of gene expression and activated signaling pathways in solid-pseudopapillary neoplasm of pancreas.Q46531130
The use of network analysis to study complex animal communication systems: a study on nightingale song.Q51089353
P921main subjectbiomarkerQ864574
P304page(s)361
P577publication date2015-11-14
P1433published inJournal of Translational MedicineQ15716664
P1476titleIdentification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network
P478volume13

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cites work (P2860)
Q98945507Blocking circ_0013912 Suppressed Cell Growth, Migration and Invasion of Pancreatic Ductal Adenocarcinoma Cells in vitro and in vivo Partially Through Sponging miR-7-5p
Q47633972Immunocytochemistry for SOX-11 and TFE3 as diagnostic markers for solid pseudopapillary neoplasms of the pancreas in FNA biopsies.
Q47139263LEF1, TFE3, and AR are putative diagnostic markers of solid pseudopapillary neoplasms
Q47260172Overexpression of SOX11 and TFE3 in Solid-Pseudopapillary Neoplasms of the Pancreas
Q64987827SOX11: friend or foe in tumor prevention and carcinogenesis?
Q39157381Solid Pseudopapillary Neoplasms of the Pancreas: A Surgical and Genetic Enigma.
Q47162127mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

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