Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements

scientific article

Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode1999PNAS...96.7847Y
P356DOI10.1073/PNAS.96.14.7847
P8608Fatcat IDrelease_z5iv27rvw5f2xf4odcicjjh5ti
P932PMC publication ID22150
P698PubMed publication ID10393910
P5875ResearchGate publication ID12905152

P50authorThomas H EickbushQ125349370
Harmit Singh MalikQ30513673
P2093author name stringJin Yang
P2860cites workThe CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase functionQ24628951
FokI dimerization is required for DNA cleavageQ24657843
The galvanization of biology: a growing appreciation for the roles of zincQ70995740
Mobility of yeast mitochondrial group II introns: engineering a new site specificity and retrohoming via full reverse splicingQ73266484
Structure of FokI has implications for DNA cleavageQ24657897
Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helicesQ27730748
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragmentsQ27732162
Structure of the multimodular endonuclease FokI bound to DNAQ27740190
Human L1 retrotransposon encodes a conserved endonuclease required for retrotranspositionQ28114795
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotranspositionQ28297748
Site-specific mutagenesis of AIDS virus reverse transcriptaseQ28338101
Origin and evolution of retroelements based upon their reverse transcriptase sequencesQ29614742
Reverse Transcriptase Encoded by a Human Transposable ElementQ29618213
High frequency retrotransposition in cultured mammalian cellsQ29618259
RNA-induced changes in the activity of the endonuclease encoded by the R2 retrotransposable elementQ33774211
The age and evolution of non-LTR retrotransposable elementsQ33864837
A new non-LTR retrotransposon porvides evidence for multiple distinct site-specific elements inCrithidia faciculataminiexon arraysQ34764767
R4, a non-LTR retrotransposon specific to the large subunit rRNA genes of nematodesQ34780681
Retroviral Reverse Transcription and Integration: Progress and ProblemsQ35161317
Transpositional recombination: mechanistic insights from studies of mu and other elementsQ35231355
SLACS retrotransposon from Trypanosoma brucei gambiense is similar to mammalian LINEsQ35828817
Retrotransposon R1Bm endonuclease cleaves the target sequence.Q35902897
RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable elementQ36552964
Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok I endonuclease.Q36601344
A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculataQ36717494
Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new familyQ36722758
Composite transposable elements in the Xenopus laevis genomeQ36769786
The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropodsQ38324626
Dong, a non-long terminal repeat (non-LTR) retrotransposable element from Bombyx moriQ40405885
Antigenic variation in malariaQ40442253
A new member of a family of site-specific retrotransposons is present in the spliced leader RNA genes of Trypanosoma cruziQ40642442
Functional expression of a sequence-specific endonuclease encoded by the retrotransposon R2BmQ42074188
Zepp, a LINE-like retrotransposon accumulated in the Chlorella telomeric regionQ42622633
Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes.Q42675207
Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II intronsQ42687817
Are retrotransposons long-term hitchhikers?Q48039375
Quick-change pathogens gain an evolutionary edgeQ50136737
Retrohoming of a bacterial group II intron: mobility via complete reverse splicing, independent of homologous DNA recombinationQ56902551
Retrohoming of a Bacterial Group II IntronQ59622194
A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRVQ59648697
P433issue14
P407language of work or nameEnglishQ1860
P304page(s)7847-7852
P577publication date1999-07-01
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleIdentification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
P478volume96

Reverse relations

cites work (P2860)
Q31044230A non-long terminal repeat retrotransposon family is restricted to the germ line micronucleus of the ciliated protozoan Tetrahymena thermophila
Q24791795A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster
Q38387036A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity.
Q36225311APE-type non-LTR retrotransposons: determinants involved in target site recognition
Q34297022An Entamoeba histolytica LINE/SINE pair inserts at common target sites cleaved by the restriction enzyme-like LINE-encoded endonuclease
Q28775890An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis
Q42004177An extraordinary retrotransposon family encoding dual endonucleases
Q42674553Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia
Q38360036Characterization of the C-terminal DNA-binding/DNA endonuclease region of a group II intron-encoded protein
Q35010566Characterization of the restriction enzyme-like endonuclease encoded by the Entamoeba histolytica non-long terminal repeat retrotransposon EhLINE1.
Q34366495Chimeric RNA transposition intermediates of the I factor produce precise retrotransposed copies
Q33737255Chimeric restriction enzymes: what is next?
Q92492918Completion of LINE integration involves an open '4-way' branched DNA intermediate
Q28742951Crypton transposons: identification of new diverse families and ancient domestication events
Q38339071Crystal structure of the endonuclease domain encoded by the telomere-specific long interspersed nuclear element, TRAS1.
Q95815638Current awareness on yeast
Q34007576DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon.
Q57272811Dual recognition–incision enzymes might be involved in mismatch repair and meiosis
Q35333511Dynamic interactions between transposable elements and their hosts
Q38362416EcoRII: a restriction enzyme evolving recombination functions?
Q36817979Endonuclease domain of non-LTR retrotransposons: loss-of-function mutants and modeling of the R2Bm endonuclease
Q40118342Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition
Q35641477Finely orchestrated movements: evolution of the ribosomal RNA genes
Q24791608Functional roles of 3'-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1Bm
Q28776429Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion
Q74420441High processivity of the reverse transcriptase from a non-long terminal repeat retrotransposon
Q34207225Human L1 element target-primed reverse transcription in vitro
Q33983519Identification of RNA binding motifs in the R2 retrotransposon-encoded reverse transcriptase
Q43582678Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs
Q24811792Identification of novel restriction endonuclease-like fold families among hypothetical proteins
Q42226271In and out of the rRNA genes: characterization of Pokey elements in the sequenced Daphnia genome
Q38667938Independently derived targeting of 28S rDNA by A- and D-clade R2 retrotransposons: Plasticity of integration mechanism
Q36969573Insulator and Ovo proteins determine the frequency and specificity of insertion of the gypsy retrotransposon in Drosophila melanogaster
Q33961271Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster
Q37518614Integration of the 5' end of the retrotransposon, R2Bm, can be complemented by homologous recombination
Q38912198Integration site selection by retroviruses and transposable elements in eukaryotes
Q26851814Integration, Regulation, and Long-Term Stability of R2 Retrotransposons
Q59061636Introns gain ground
Q39013867Involvement of Conserved Amino Acids in the C-Terminal Region of LINE-1 ORF2p in Retrotransposition
Q36141425L1 hybridization enrichment: a method for directly accessing de novo L1 insertions in the human germline.
Q42685877LINEs and SINE-like elements of the protist Entamoeba histolytica
Q34442041LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling
Q33938490Mobile elements and the human genome
Q36225341Mobile genetic elements and sexual reproduction
Q31113756New Trypanosoma cruzi repeated element that shows site specificity for insertion.
Q33898508Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions
Q90029453Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function
Q34467155Origins and evolution of viruses of eukaryotes: The ultimate modularity
Q53352662PPP1R13L variant associated with prognosis for patients with rectal cancer.
Q35121885Preferential occupancy of R2 retroelements on the B chromosomes of the grasshopper Eyprepocnemis plorans.
Q35842102Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes
Q39693170R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site.
Q33925242R2 target-primed reverse transcription: ordered cleavage and polymerization steps by protein subunits asymmetrically bound to the target DNA.
Q24674917RNA from the 5' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site
Q34276636Recombinant SINEs are formed at high frequency during induced retrotransposition in vivo
Q24817137Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction
Q34688425SINEs and LINEs: the art of biting the hand that feeds you.
Q38354666Secondary structures for 5' regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints
Q39468357Sequence-specific recognition and cleavage of telomeric repeat (TTAGG)(n) by endonuclease of non-long terminal repeat retrotransposon TRAS1.
Q92756562Sequence-specific retrotransposition of 28S rDNA-specific LINE R2Ol in human cells
Q30665455Structural and phylogenetic analysis of TRAS, telomeric repeat-specific non-LTR retrotransposon families in Lepidopteran insects
Q52594699Tandem UAA repeats at the 3'-end of the transcript are essential for the precise initiation of reverse transcription of the I factor in Drosophila melanogaster.
Q38316095Target specificity of the endonuclease from the Xenopus laevis non-long terminal repeat retrotransposon, Tx1L
Q42108562Targeting novel sites: The N-terminal DNA binding domain of non-LTR retrotransposons is an adaptable module that is implicated in changing site specificities
Q42640984Teleost fish genomes contain a diverse array of L1 retrotransposon lineages that exhibit a low copy number and high rate of turnover.
Q34207786Telomere-targeted retrotransposons in the rice blast fungus Magnaporthe oryzae: agents of telomere instability
Q27660450The Crystal Structure of D212 from Sulfolobus Spindle-Shaped Virus Ragged Hills Reveals a New Member of the PD-(D/E)XK Nuclease Superfamily
Q38333658The R2 retrotransposon RNA families
Q34588175The diversity of retrotransposons and the properties of their reverse transcriptases
Q47620228The diversity of retrotransposons in the yeast Cryptococcus neoformans
Q44584038The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis
Q45050393The non-LTR retrotransposon R2 in termites (Insecta, Isoptera): characterization and dynamics
Q35610274The outs and ins of transposition: from mu to kangaroo
Q33951984Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead
Q45959989Ticks have R2 retrotransposons but not the consensus transposon target site of other arthropods.
Q35002460Transcription of Endogenous and Exogenous R2 Elements in the rRNA Gene Locus of Drosophila melanogaster

Search more.