Alternative mRNA fates identified in microRNA-associated transcriptome analysis

scientific article

Alternative mRNA fates identified in microRNA-associated transcriptome analysis is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1016560071
P356DOI10.1186/1471-2164-13-561
P932PMC publication ID3505728
P698PubMed publication ID23083446
P5875ResearchGate publication ID232527889

P2093author name stringNham Tran
Murray J Cairns
Adam P Carroll
Paul A Tooney
P2860cites workAceView: a comprehensive cDNA-supported gene and transcripts annotationQ21184141
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysisQ21284220
MicroRNAs miR-17 and miR-20a inhibit T cell activation genes and are under-expressed in MS whole bloodQ21562182
Myotubularin and MTMR2, phosphatidylinositol 3-phosphatases mutated in myotubular myopathy and type 4B Charcot-Marie-Tooth diseaseQ24291963
Muscle-specific alternative splicing of myotubularin-related 1 gene is impaired in DM1 muscle cellsQ24306247
A matrix metalloproteinase expressed on the surface of invasive tumour cellsQ24312733
miRBase: microRNA sequences, targets and gene nomenclatureQ24538656
TRANSFAC: a database on transcription factors and their DNA binding sitesQ24545748
Schizophrenia is associated with an increase in cortical microRNA biogenesisQ24595592
MicroRNA targeting specificity in mammals: determinants beyond seed pairingQ24607724
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastomaQ24629145
In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanomaQ24629400
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAsQ24629589
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?Q24629627
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNAQ24630341
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammalsQ24630840
MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin geneQ24645163
MicroRNA expression profiles associated with prognosis and therapeutic outcome in colon adenocarcinomaQ24653676
Most mammalian mRNAs are conserved targets of microRNAsQ24655061
CD34+ hematopoietic stem-progenitor cell microRNA expression and function: a circuit diagram of differentiation controlQ24676449
Untranslated regions of mRNAsQ24791029
MicroRNA targets in DrosophilaQ24806738
Prediction of mammalian microRNA targetsQ27860498
Mammalian microRNAs predominantly act to decrease target mRNA levelsQ27860535
An extensive class of small RNAs in Caenorhabditis elegansQ27860626
MicroRNAs modulate hematopoietic lineage differentiationQ27860661
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegansQ27860895
Identification of novel genes coding for small expressed RNAsQ27860917
Switching from repression to activation: microRNAs can up-regulate translationQ28131790
Mechanisms of alternative pre-messenger RNA splicingQ28131822
The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translationQ28143010
Down-regulation of miR-17 family expression in response to retinoic acid induced neuronal differentiationQ28254300
Diagnostic and prognostic implications of microRNA profiling in prostate carcinomaQ28254781
Identification of a microRNA signature associated with progression of leukoplakia to oral carcinomaQ28259466
Inhibition of translational initiation by Let-7 MicroRNA in human cellsQ28265842
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradationQ28268899
Tcl1 expression in chronic lymphocytic leukemia is regulated by miR-29 and miR-181Q28279673
Association analysis of the chromosome 4p-located G protein-coupled receptor 78 (GPR78) gene in bipolar affective disorder and schizophreniaQ28289500
hsa-mir-181a and hsa-mir-181b function as tumor suppressors in human glioma cellsQ28291188
The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiationQ28298317
miR-181b negatively regulates activation-induced cytidine deaminase in B cellsQ28508305
Presynaptic Ca2+-activated K+ channels in glutamatergic hippocampal terminals and their role in spike repolarization and regulation of transmitter releaseQ28573459
MicroRNAs direct rapid deadenylation of mRNAQ29614566
A brain-specific microRNA regulates dendritic spine developmentQ29614753
Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTRQ29619777
Spatial preferences of microRNA targets in 3' untranslated regionsQ33287051
TGFbeta-mediated upregulation of hepatic miR-181b promotes hepatocarcinogenesis by targeting TIMP3.Q33754007
Variation in DISC1 affects hippocampal structure and function and increases risk for schizophreniaQ33842912
miRNA deregulation by epigenetic silencing disrupts suppression of the oncogene PLAG1 in chronic lymphocytic leukemiaQ34079123
BIK, the founding member of the BH3-only family proteins: mechanisms of cell death and role in cancer and pathogenic processesQ34085382
Upregulation of dicer and microRNA expression in the dorsolateral prefrontal cortex Brodmann area 46 in schizophrenia.Q34152043
Association between the TRAX/DISC locus and both bipolar disorder and schizophrenia in the Scottish populationQ34412363
Short RNAs repress translation after initiation in mammalian cells.Q34495292
Evidence for association of DNA sequence variants in the phosphatidylinositol-4-phosphate 5-kinase IIalpha gene (PIP5K2A) with schizophreniaQ34542095
miRGen: a database for the study of animal microRNA genomic organization and functionQ34572597
Transforming growth factor-β regulates the sphere-initiating stem cell-like feature in breast cancer through miRNA-181 and ATM.Q34716744
MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosisQ34835189
A KLF4-miRNA-206 autoregulatory feedback loop can promote or inhibit protein translation depending upon cell context.Q35096699
Dynamic regulation of miRNA expression in ordered stages of cellular development.Q35677284
Stabilization of hepatitis C virus RNA by an Ago2-miR-122 complex.Q35735135
MiR-181 mediates cell differentiation by interrupting the Lin28 and let-7 feedback circuitQ35754703
MT1-MMP: a key regulator of cell migration in tissueQ36627872
MicroRNAs silence gene expression by repressing protein expression and/or by promoting mRNA decay.Q36768214
Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAsQ37269849
Post-transcriptional trafficking and regulation of neuronal gene expression.Q37968215
MicroRNA gene expression during retinoic acid-induced differentiation of human acute promyelocytic leukemia.Q38305314
MicroRNAs and their target messenger RNAs associated with ovarian cancer response to chemotherapyQ39880558
Dysregulation of miRNA 181b in the temporal cortex in schizophrenia.Q40026960
ARED Organism: expansion of ARED reveals AU-rich element cluster variations between human and mouseQ42133742
Non-coding MicroRNAs hsa-let-7g and hsa-miR-181b are Associated with Chemoresponse to S-1 in Colon Cancer.Q42705196
A restricted signature of miRNAs distinguishes APL blasts from normal promyelocytesQ43277279
Association of DISC1/TRAX haplotypes with schizophrenia, reduced prefrontal gray matter, and impaired short- and long-term memoryQ46113483
Tissue inhibitor of metalloproteinase 3 deficiency causes hepatic steatosis and adipose tissue inflammation in miceQ46232844
Synaptic protein synthesis associated with memory is regulated by the RISC pathway in DrosophilaQ47071915
GATHER: a systems approach to interpreting genomic signaturesQ48430257
Distribution of high-conductance Ca(2+)-activated K+ channels in rat brain: targeting to axons and nerve terminalsQ49158543
MicroRNA expression in canine mammary cancerQ81716216
Clinical, pathologic, and molecular features of early-onset colorectal carcinomaQ82795468
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
microRNAQ310899
P304page(s)561
P577publication date2012-10-19
P1433published inBMC GenomicsQ15765854
P1476titleAlternative mRNA fates identified in microRNA-associated transcriptome analysis
P478volume13

Reverse relations

cites work (P2860)
Q34044305Activity-associated miRNA are packaged in Map1b-enriched exosomes released from depolarized neurons.
Q34370550Alteration of imprinted Dlk1-Dio3 miRNA cluster expression in the entorhinal cortex induced by maternal immune activation and adolescent cannabinoid exposure
Q38077761Context-specific microRNA function in developmental complexity.
Q35653829Distinct miRNA expression in dorsal striatal subregions is associated with risk for addiction in rats.
Q42229509Genome-wide mRNA and miRNA analysis of peripheral blood mononuclear cells (PBMC) reveals different miRNAs regulating HIV/HCV co-infection
Q35579767Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii
Q37034049MicroRNA expression and its association with DNA repair in preimplantation embryos
Q26744408MicroRNA: Small RNA mediators of the brains genomic response to environmental stress
Q34227170Ontogeny of small RNA in the regulation of mammalian brain development
Q28389474Roles of microRNA-146a and microRNA-181b in regulating the secretion of tumor necrosis factor-α and interleukin-1β in silicon dioxide-induced NR8383 rat macrophages
Q89478692Schizophrenia-associated MicroRNA-Gene Interactions in the Dorsolateral Prefrontal Cortex
Q34931276Sex-biased gene expression and sexual conflict throughout development
Q55515377Tensor Decomposition-Based Unsupervised Feature Extraction Can Identify the Universal Nature of Sequence-Nonspecific Off-Target Regulation of mRNA Mediated by MicroRNA Transfection.
Q39105795Trans-regulation of RNA-binding protein motifs by microRNA.
Q38181446Understanding principles of miRNA target recognition and function through integrated biological and bioinformatics approaches
Q38310967miR-181b promotes cell proliferation and reduces apoptosis by repressing the expression of adenylyl cyclase 9 (AC9) in cervical cancer cells
Q33905955miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation.

Search more.