Mechanism of DNA loading by the DNA repair helicase XPD.

scientific article published on 20 February 2016

Mechanism of DNA loading by the DNA repair helicase XPD. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKW102
P932PMC publication ID4824113
P698PubMed publication ID26896802
P5875ResearchGate publication ID295395253

P50authorJames Henderson NaismithQ17507299
Diana Constantinescu-AruxandeiQ58184208
Carlos PenedoQ79695925
Malcolm F. WhiteQ38319114
P2093author name stringBiljana Petrovic-Stojanovska
P2860cites workDistinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repairQ24304166
XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutationsQ24603061
The helicase XPD unwinds bubble structures and is not stalled by DNA lesions removed by the nucleotide excision repair pathwayQ24652700
Taking a molecular motor for a spin: helicase mechanism studied by spin labeling and PELDOR.Q27324828
Emerging critical roles of Fe-S clusters in DNA replication and repairQ27332013
Structure of the DNA Repair Helicase XPDQ27650710
Crystal Structure of the FeS Cluster–Containing Nucleotide Excision Repair Helicase XPDQ27650943
Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocationQ27675554
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistanceQ27766086
XDSQ27860472
REFMAC5 for the refinement of macromolecular crystal structuresQ27860905
Phasercrystallographic softwareQ27860930
Refinement of macromolecular structures by the maximum-likelihood methodQ27861011
The CCP4 suite: programs for protein crystallographyQ27861090
Scaling and assessment of data qualityQ27861107
The DNA repair helicases XPD and FancJ have essential iron-sulfur domainsQ27932999
The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseasesQ28142591
Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7Q28646653
How good are my data and what is the resolution?Q29615314
DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factorQ29619833
Structure and mechanism of helicases and nucleic acid translocasesQ29620151
Trapping distinct structural states of a protein/DNA interaction through disulfide crosslinking.Q53946420
Trapping of a catalytic HIV reverse transcriptase*template:primer complex through a disulfide bond.Q54052422
Automated diffraction image analysis and spot searching for high-throughput crystal screeningQ57987325
Robust indexing for automatic data collectionQ33525533
General Methods for Analysis of Sequential “n-step” Kinetic Mechanisms: Application to Single Turnover Kinetics of Helicase-Catalyzed DNA UnwindingQ34183054
XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase.Q34184951
Human xeroderma pigmentosum group D gene encodes a DNA helicaseQ34358690
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.Q34407601
Mechanisms of helicasesQ34521150
TFIIH enzymatic activities in transcription and nucleotide excision repairQ34541014
Xpd, a Structural Bridge and a Functional LinkQ35540950
The transcriptional complexity of the TFIIH complexQ35556199
ATP-stimulated, DNA-mediated redox signaling by XPD, a DNA repair and transcription helicaseQ35602428
DNA charge transport as a first step in coordinating the detection of lesions by repair proteinsQ35751064
Autoindexing diffraction images with iMosflmQ36946731
Strand-specific recognition of DNA damages by XPD provides insights into nucleotide excision repair substrate versatilityQ37563531
Two steps forward, one step back: determining XPD helicase mechanism by single-molecule fluorescence and high-resolution optical tweezers.Q38190273
Structure of a DNA glycosylase searching for lesionsQ38315509
DNA quality control by a lesion sensor pocket of the xeroderma pigmentosum group D helicase subunit of TFIIH.Q39204361
Regulation of translocation polarity by helicase domain 1 in SF2B helicasesQ40514758
TFIIH with inactive XPD helicase functions in transcription initiation but is defective in DNA repair.Q40901956
Characterization and kinetic analysis of the intracellular domain of human protein tyrosine phosphatase beta (HPTP beta) using synthetic phosphopeptidesQ41868748
A simple and efficient expression and purification system using two newly constructed vectorsQ42562283
Direct correlation of DNA binding and single protein domain motion via dual illumination fluorescence microscopyQ42935113
Use of fluorinated tyrosine phosphates to probe the substrate specificity of the low molecular weight phosphatase activity of calcineurin.Q43689393
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)2806-2815
P577publication date2016-02-20
P1433published inNucleic Acids ResearchQ135122
P1476titleMechanism of DNA loading by the DNA repair helicase XPD
P478volume44

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cites work (P2860)
Q38706750Acute exposure to DEHP metabolite, MEHP cause genotoxicity, mutagenesis and carcinogenicity in mammalian Chinese hamster ovary cells
Q98159075Cloning of the XPD gene and its function in malignant melanoma cells
Q41002702Conservation and Divergence in Nucleotide Excision Repair Lesion Recognition.
Q60306286DNA translocation mechanism of an XPD family helicase
Q90631479High-resolution cryo-EM structures of TFIIH and their functional implications
Q91555112In TFIIH the Arch domain of XPD is mechanistically essential for transcription and DNA repair
Q59813591Molecular and Cellular Functions of the Warsaw Breakage Syndrome DNA Helicase DDX11
Q37078722Nucleoside Triphosphate Phosphohydrolase I (NPH I) Functions as a 5' to 3' Translocase in Transcription Termination of Vaccinia Early Genes
Q51769224Structures of transcription pre-initiation complex with TFIIH and Mediator.
Q37628277Sulfolobus acidocaldarius UDG Can Remove dU from the RNA Backbone: Insight into the Specific Recognition of Uracil Linked with Deoxyribose
Q64101945The complete structure of the human TFIIH core complex
Q41596459The cryo-electron microscopy structure of human transcription factor IIH.
Q50210334The elemental role of iron in DNA synthesis and repair.

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