The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis

scientific article published on 22 March 2013

The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/EMBOJ.2013.49
P8608Fatcat IDrelease_sxwbv2mrozhhflkjtcplmya55e
P932PMC publication ID3630354
P698PubMed publication ID23524848
P5875ResearchGate publication ID236076648

P50authorJian-Kang ZhuQ9088120
P2093author name stringRenyi Liu
Jun Liu
Tao Cai
Cui-Jun Zhang
Huan-Wei Huang
Jin-Xing Zhou
Kun Dou
Xin-Jian He
Ze-Yang Ma
Su-Wei Zhang
P2860cites workArabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysisQ80513396
RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formationQ82821093
CAJAL BODIES: A Long History of DiscoveryQ22065410
The human homologue of the yeast splicing factor prp6p contains multiple TPR elements and is stably associated with the U5 snRNP via protein-protein interactionsQ22254008
OCRE: a novel domain made of imperfect, aromatic-rich octamer repeatsQ24307113
RNAi-mediated targeting of heterochromatin by the RITS complexQ24623437
Establishing, maintaining and modifying DNA methylation patterns in plants and animalsQ24630397
RNA polymerase V transcription guides ARGONAUTE4 to chromatinQ24653430
Genetic and functional diversification of small RNA pathways in plantsQ24797901
Comprehensive proteomic analysis of the human spliceosomeQ28201545
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAiQ28218870
RNA-mediated chromatin-based silencing in plantsQ28236381
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicingQ28249503
Small RNAs in transcriptional gene silencing and genome defenceQ28307317
U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylationQ29032058
Transposable elements and the epigenetic regulation of the genomeQ29617224
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesisQ30481498
Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thalianaQ33319282
A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.Q33345476
RNA-directed DNA methylation and plant development require an IWR1-type transcription factorQ33348333
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in ArabidopsisQ33348976
Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunityQ33486513
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in ArabidopsisQ33565883
Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeastQ33648862
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.Q33833568
Intron splicing suppresses RNA silencing in Arabidopsis.Q33937240
Transportin-SR is required for proper splicing of resistance genes and plant immunityQ33954494
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.Q33979576
RNA polymerase IV directs silencing of endogenous DNA.Q33984841
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase IIQ34160383
RNAi-dependent formation of heterochromatin and its diverse functionsQ34422701
The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.Q34626491
Splicing factors facilitate RNAi-directed silencing in fission yeastQ34864584
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genesQ34881670
Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin.Q35301089
The splicing factor SR45 affects the RNA-directed DNA methylation pathway in ArabidopsisQ35897258
An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing.Q35979204
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenomeQ36186371
Cell biology of the Arabidopsis nuclear siRNA pathway for RNA-directed chromatin modificationQ36768187
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylationQ37111127
Spliceosome assembly and compositionQ37124798
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.Q37238540
The Cajal bodyQ37255404
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant developmentQ37457953
Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylationQ38341855
Split genes and RNA splicingQ40389967
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.Q41807998
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.Q41836564
Telomerase RNA biogenesis involves sequential binding by Sm and Lsm complexesQ41967731
Involvement of the spliceosomal U4 small nuclear RNA in heterochromatic gene silencing at fission yeast centromeresQ42918010
Establishment and maintenance of a heterochromatin domainQ44128134
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyaseQ44277312
The cyclin L homolog MOS12 and the MOS4-associated complex are required for the proper splicing of plant resistance genes.Q44937639
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.Q46026182
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencingQ46125181
Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencingQ46966166
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylationQ48084508
Atypical RNA polymerase subunits required for RNA-directed DNA methylationQ48136173
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formationQ48146967
Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.Q51920988
The spen family protein FPA controls alternative cleavage and polyadenylation of RNA.Q53348104
Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing.Q53619809
Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.Q55039785
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in ArabidopsisQ56926925
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing centerQ79900373
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectDNA methylationQ874745
P304page(s)1128-1140
P577publication date2013-03-22
P1433published inThe EMBO JournalQ1278554
P1476titleThe splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis
P478volume32

Reverse relations

cites work (P2860)
Q34998297A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis
Q38308704A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA in Arabidopsis thaliana
Q34441358A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast
Q37691018Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants
Q38157825Alternative splicing at the intersection of biological timing, development, and stress responses
Q34994886Arabidopsis C-terminal domain phosphatase-like 1 functions in miRNA accumulation and DNA methylation
Q38157823Complexity of the alternative splicing landscape in plants.
Q35123235DNA methylation and expression of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm.
Q35042967Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis
Q44125054Differential methylation during maize leaf growth targets developmentally regulated genes
Q51595031Dynamic Distribution and Interaction of the Arabidopsis SRSF1 Subfamily Splicing Factors.
Q59693962Dynamics and function of DNA methylation in plants
Q34266419Emerging roles of RNA processing factors in regulating long non-coding RNAs.
Q55263360Hypermethylation of protocadherin γ subfamily A12 and solute carrier family 19 A 1 promoters contributes to the occurrence and metastasis of colorectal cancer.
Q37728551MOS2 has redundant function with its homolog MOS2H and is required for proper splicing of SNC1.
Q37682692Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Q36892776Myriad Triple-Helix-Forming Structures in the Transposable Element RNAs of Plants and Fungi
Q35090680NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis
Q35488483PRL1, an RNA-binding protein, positively regulates the accumulation of miRNAs and siRNAs in Arabidopsis
Q33858687RNA Splicing Factors and RNA-Directed DNA Methylation.
Q38548910RNA-directed DNA methylation in plants.
Q53062086Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.
Q34660040SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis
Q35113601Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium.
Q42777856The Arabidopsis MOS4-associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing
Q36985628The Arabidopsis acetylated histone-binding protein BRAT1 forms a complex with BRP1 and prevents transcriptional silencing.
Q38254276The influence of Argonaute proteins on alternative RNA splicing
Q37534374The spliceosome as a transposon sensor
Q35548099siRNA-directed DNA Methylation in Plants

Search more.