| scholarly article | Q13442814 |
| P50 | author | Peter Balfe | Q55189943 |
| P2093 | author name string | Simmonds P | |
| Ludlam CA | |||
| Brown AJ | |||
| Bishop JO | |||
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| Extensive variation of human immunodeficiency virus type-1 in vivo | Q43913496 | ||
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| The polymerase chain reaction in the diagnosis of vertically transmitted HIV infection | Q44527131 | ||
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| Diagnosis of AIDS by using a 12-amino acid peptide representing an immunodominant epitope of the human immunodeficiency virus | Q45848000 | ||
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| Accelerated evolution in the reactive centre regions of serine protease inhibitors | Q48348346 | ||
| Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS. | Q48363856 | ||
| Generation of a neutralization-resistant variant of HIV-1 is due to selection for a point mutation in the envelope gene. | Q54381624 | ||
| Human antibody response to a strain-specific HIV-1 gp120 epitope associated with cell fusion inhibition. | Q55242480 | ||
| Single amino-acid changes in HIV envelope affect viral tropism and receptor binding | Q59074872 | ||
| Carbohydrate dramatically influences immune reactivity of antisera to viral glycoprotein antigens | Q70688626 | ||
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 11 | |
| P304 | page(s) | 5840-5850 | |
| P577 | publication date | 1990-12-01 | |
| P1433 | published in | Journal of Virology | Q1251128 |
| P1476 | title | Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1 | |
| P478 | volume | 64 |
| Q33792878 | A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure |
| Q35729054 | Absence of HIV-1 evolution in the gut-associated lymphoid tissue from patients on combination antiviral therapy initiated during primary infection. |
| Q35647691 | Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID |
| Q27469352 | Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as a decoy |
| Q27478199 | Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus |
| Q41849004 | Advanced Engineering Strategies for Periodontal Complex Regeneration |
| Q30378719 | Advantages of using the QIAshredder instead of restriction digestion to prepare DNA for droplet digital PCR |
| Q37405780 | An EIAV field isolate reveals much higher levels of subtype variability than currently reported for the equine lentivirus family |
| Q24797088 | An algorithm for mapping positively selected members of quasispecies-type viruses |
| Q35839969 | Analysis of envelope sequence variants suggests multiple mechanisms of mother-to-child transmission of human immunodeficiency virus type 1 |
| Q36656386 | Analysis of mutations in the V3 domain of gp160 that affect fusion and infectivity |
| Q33782045 | Analysis of the temporal relationship between human immunodeficiency virus type 1 quasispecies in sequential blood samples and various organs obtained at autopsy |
| Q36644253 | Autologous antibody response against the principal neutralizing domain of human immunodeficiency virus type 1 isolated from infected humans |
| Q36640639 | B epitopes and selection pressures in feline immunodeficiency virus envelope glycoproteins |
| Q39451862 | Broad and potent neutralizing antibody responses elicited in natural HIV-2 infection |
| Q34539781 | Central nervous system compartmentalization of HIV-1 subtype C variants early and late in infection in young children |
| Q41978842 | Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection |
| Q35704022 | Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection |
| Q34344788 | Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection |
| Q36796303 | Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: rate of sequence change and low frequency of inactivating mutations |
| Q37031589 | Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient |
| Q28740329 | Cross-sectional detection of acute HIV infection: timing of transmission, inflammation and antiretroviral therapy |
| Q36540055 | Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing |
| Q33589350 | Detection and identification of Leishmania DNA within naturally infected sand flies by seminested PCR on minicircle kinetoplastic DNA |
| Q37064067 | Detection of parvovirus B19 in donated blood: a model system for screening by polymerase chain reaction |
| Q37146859 | Development of a quasispecies of human immunodeficiency virus type 1 in vivo |
| Q22248077 | Development of vivo of genetic variability of simian immunodeficiency virus |
| Q35127334 | Differential coreceptor expression allows for independent evolution of non-syncytium-inducing and syncytium-inducing HIV-1. |
| Q40113553 | Discontinuous sequence change of human immunodeficiency virus (HIV) type 1 env sequences in plasma viral and lymphocyte-associated proviral populations in vivo: implications for models of HIV pathogenesis. |
| Q35886136 | Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses |
| Q54974242 | Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. |
| Q37145307 | Elevated hypermutation levels in HIV-1 natural viral suppressors |
| Q28482493 | Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing |
| Q33840365 | Equine infectious anemia virus genomic evolution in progressor and nonprogressor ponies. |
| Q33645838 | Evolution and biological characterization of human immunodeficiency virus type 1 subtype E gp120 V3 sequences following horizontal and vertical virus transmission in a single family. |
| Q39304416 | Evolution in a chronic RNA virus infection: selection on HTLV-I tax protein differs between healthy carriers and patients with tropical spastic paraparesis. |
| Q33823310 | Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy. |
| Q33784321 | Evolution of syncytium-inducing and non-syncytium-inducing biological virus clones in relation to replication kinetics during the course of human immunodeficiency virus type 1 infection. |
| Q33676640 | Evolution of the HIV-1 env gene in the Rag2-/- gammaC-/- humanized mouse model |
| Q40040768 | Evolution of the human immunodeficiency virus type 2 envelope gene in preimmunized and persistently infected rhesus macaques |
| Q45777616 | Extensive sequence variation of feline immunodeficiency virus env genes in isolates from naturally infected cats |
| Q36081789 | Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization |
| Q36631349 | Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses |
| Q40024166 | Genetic characterization of rebounding HIV-1 after cessation of highly active antiretroviral therapy |
| Q36656211 | Genetic differences accounting for evolution and pathogenicity of simian immunodeficiency virus from a sooty mangabey monkey after cross-species transmission to a pig-tailed macaque |
| Q33785632 | Genetically related human immunodeficiency virus type 1 in three adults of a family with no identified risk factor for intrafamilial transmission |
| Q33899080 | Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis |
| Q35839936 | Growth of macrophage-tropic and primary human immunodeficiency virus type 1 (HIV-1) isolates in a unique CD4+ T-cell clone (PM1): failure to downregulate CD4 and to interfere with cell-line-tropic HIV-1. |
| Q30390022 | HIV - 1 SUBTYPES, ITS IMPLICATIONS AND VIRAL DYNAMICS. |
| Q93888964 | HIV colonizing peripheral blood monocytes follows lymphocytic isolates in shifting from NSI to SI genotype |
| Q47548221 | HIV evolution and diversity in ART-treated patients |
| Q33680752 | HIV-1 Populations in Semen Arise through Multiple Mechanisms |
| Q34701719 | HIV-1-induced AIDS in monkeys |
| Q35852493 | Heteroduplex mobility assay and phylogenetic analysis of V3 region sequences of human immunodeficiency virus type 1 isolates from Gulu, northern Uganda. The Italian-Ugandan Cooperation AIDS Program. |
| Q39483634 | High resolution sequencing of hepatitis C virus reveals limited intra-hepatic compartmentalization in end-stage liver disease. |
| Q35940070 | High throughput functional analysis of HIV-1 env genes without cloning |
| Q36491810 | High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems |
| Q39878854 | Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo |
| Q37743275 | Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains |
| Q36690524 | Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivation in vitro |
| Q36636446 | Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. |
| Q35875709 | Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease |
| Q33782102 | Human immunodeficiency virus type 1 populations in blood and semen |
| Q29619510 | Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection |
| Q33850041 | Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system. |
| Q30425937 | Identification of single and dual infections with distinct subtypes of human immunodeficiency virus type 1 by using restriction fragment length polymorphism analysis |
| Q36631497 | Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns |
| Q45056043 | Immunological reactivity of a human immunodeficiency virus type I derived peptide representing a consensus sequence of the GP120 major neutralizing region V3 |
| Q36635367 | In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop. |
| Q39872035 | In vivo pathogenic properties of two clonal human immunodeficiency virus type 1 isolates. |
| Q40106450 | Independent fluctuation of human immunodeficiency virus type 1 rev and gp41 quasispecies in vivo |
| Q36649929 | Independent variation and positive selection in env V1 and V2 domains within maternal-infant strains of human immunodeficiency virus type 1 in vivo |
| Q33839196 | Infection of the CD45RA+ (naive) subset of peripheral CD8+ lymphocytes by human immunodeficiency virus type 1 in vivo |
| Q37302765 | Inferring viral population structures using heteroduplex mobility and DNA sequence analyses |
| Q35076953 | Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors |
| Q35874055 | Intrapatient sequence variation of the gag gene of human immunodeficiency virus type 1 plasma virions |
| Q37666746 | Lessons in AIDS vaccine development learned from studies of equine infectious, anemia virus infection and immunity |
| Q37257457 | Longitudinal analysis of intra-host simian immunodeficiency virus recombination in varied tissues of the rhesus macaque model for neuroAIDS. |
| Q37273086 | Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1. |
| Q22241902 | Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral, and vertical transmission |
| Q42928634 | Major coexisting human immunodeficiency virus type 1 env gene subpopulations in the peripheral blood are produced by cells with similar turnover rates and show little evidence of genetic compartmentalization |
| Q37683012 | Molecular characterization of human immunodeficiency virus type 1 and hepatitis C virus in paid blood donors and injection drug users in china |
| Q36532973 | Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones |
| Q36655707 | Molecular mimicry between the human immunodeficiency virus type 1 gp120 V3 loop and human brain proteins |
| Q36687307 | Molecular profile of human immunodeficiency virus type 1 infection in symptomless patients and in patients with AIDS |
| Q39596106 | Mosaic structure of the human immunodeficiency virus type 1 genome infecting lymphoid cells and the brain: evidence for frequent in vivo recombination events in the evolution of regional populations. |
| Q33592278 | Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis |
| Q33369086 | Net positive charge of HIV-1 CRF01_AE V3 sequence regulates viral sensitivity to humoral immunity |
| Q36549092 | Novel and dynamic evolution of equine infectious anemia virus genomic quasispecies associated with sequential disease cycles in an experimentally infected pony |
| Q35652703 | Ongoing HIV Transmission and the HIV Care Continuum in North Carolina |
| Q40723808 | Pathogen evolution within host individuals as a primary cause of senescence |
| Q37537734 | Pattern of gp120 sequence divergence linked to a lack of clinical progression in human immunodeficiency virus type 1 infection |
| Q94570371 | Pervasive and non-random recombination in near full-length HIV genomes from Uganda |
| Q36697652 | Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule |
| Q30404569 | Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants |
| Q39543503 | Position and degree of mismatches and the mobility of DNA heteroduplexes |
| Q36798199 | Positive selection and rates of evolution in immunodeficiency viruses from humans and chimpanzees |
| Q37145228 | Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants |
| Q43449921 | Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses |
| Q40106668 | Recombinant CD4-selected human immunodeficiency virus type 1 variants with reduced gp120 affinity for CD4 and increased cell fusion capacity |
| Q33803939 | Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes |
| Q35828735 | Relationship between the V3 loop and the phenotypes of human immunodeficiency virus type 1 (HIV-1) isolates from children perinatally infected with HIV-1. |
| Q34120265 | Remarkable lethal G-to-A mutations in vif-proficient HIV-1 provirus by individual APOBEC3 proteins in humanized mice |
| Q37612507 | Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness |
| Q35159523 | Robust genital gag-specific CD8+ T-cell responses in mice upon intramuscular immunization with simian adenoviral vectors expressing HIV-1-gag. |
| Q35558621 | Role of donor genital tract HIV-1 diversity in the transmission bottleneck |
| Q33819390 | Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus. |
| Q36647820 | Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection |
| Q42596257 | Sequence comparison of the non-structural genes of four different types of Aleutian mink disease parvovirus indicates an unusual degree of variability. |
| Q36642795 | Simian immunodeficiency viruses from central and western Africa: evidence for a new species-specific lentivirus in tantalus monkeys. |
| Q36520698 | Simple determination of human immunodeficiency virus type 1 syncytium-inducing V3 genotype by PCR. |
| Q35879784 | Size variation within the second hypervariable region of the surface envelope gene of the bovine lentivirus BIV in experimentally and naturally infected cattle. |
| Q35895520 | Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS |
| Q34280044 | Structural dynamics of HIV-1 envelope Gp120 outer domain with V3 loop |
| Q36820549 | Structure and genetic variability of envelope glycoproteins of two antigenic variants of caprine arthritis-encephalitis lentivirus |
| Q36634149 | The "V3" domain is a determinant of simian immunodeficiency virus cell tropism. |
| Q37386398 | The efficiency of single genome amplification and sequencing is improved by quantitation and use of a bioinformatics tool |
| Q33793050 | The explosive human immunodeficiency virus type 1 epidemic among injecting drug users of Kathmandu, Nepal, is caused by a subtype C virus of restricted genetic diversity |
| Q35140408 | The genetic bottleneck in vertical transmission of subtype C HIV-1 is not driven by selection of especially neutralization-resistant virus from the maternal viral population |
| Q37099851 | The human immunodeficiency virus type 1 envelope spike of primary viruses can suppress antibody access to variable regions |
| Q40422860 | The use of uracil-N-glycosylase in the preparation of PCR products for direct sequencing. |
| Q35914315 | Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques |
| Q37333789 | Transitions to and from the CD4-bound conformation are modulated by a single-residue change in the human immunodeficiency virus type 1 gp120 inner domain |
| Q35020053 | Turnover of env variable region 1 and 2 genotypes in subjects with late-stage human immunodeficiency virus type 1 infection |
| Q40047131 | V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability. |
| Q36829102 | Variation in simian immunodeficiency virus env is confined to V1 and V4 during progression to simian AIDS. |
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