Role of donor genital tract HIV-1 diversity in the transmission bottleneck (scientific article published on 7 November 2011)

Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission

Q24682756

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

Q27861000

Subcompartmentalization of HIV-1 quasispecies between seminal cells and seminal plasma indicates their origin in distinct genital tissues

Q78678650

Evolution of couples' voluntary counseling and testing for HIV in Lusaka, Zambia

Q81556504

Virologic and immunologic determinants of heterosexual transmission of human immunodeficiency virus type 1 in Africa.

Q37357668

Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1

Q37568289

Rapid HIV testing and counseling for voluntary testing centers in Africa

Q39236204

Distinct but related human immunodeficiency virus type 1 variant populations in genital secretions and blood

Q39331305

A new statistic for detecting genetic differentiation.

Q42552289

Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV).

Q45395687

Cellular replication of human immunodeficiency virus type 1 occurs in vaginal secretions

Q45737000

Human immunodeficiency virus type 1 shedding pattern in semen correlates with the compartmentalization of viral Quasi species between blood and semen.

Q45741687

Association between culturable human immunodeficiency virus type 1 (HIV-1) in semen and HIV-1 RNA levels in semen and blood: evidence for compartmentalization of HIV-1 between semen and blood

Q45757928

Discordance in HIV-1 viral loads and antiretroviral drug concentrations comparing semen and blood plasma.

Q45974595

Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission

Q47878972

Automated phylogenetic detection of recombination using a genetic algorithm.

Q51938478

Comparison of cervicovaginal lavage, cervicovaginal lavage enriched with cervical swab, and vaginal tampon for the detection of HIV-1 RNA and HSV-2 DNA in genital secretions.

Q54496319

HIV-1 in semen: an isolated virus reservoir

Q28252399

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

Q29619510

New heterosexually transmitted HIV infections in married or cohabiting couples in urban Zambia and Rwanda: an analysis of survey and clinical data

Q31160798

Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1

Q33402461

Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations

Q33505667

Effects of genital tract inflammation on human immunodeficiency virus type 1 V3 populations in blood and semen

Q33604252

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

Q33680395

HIV-1 Populations in Semen Arise through Multiple Mechanisms

Q33680752

Semen-specific genetic characteristics of human immunodeficiency virus type 1 env.

Q33717839

Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B.

Q33780595

Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels

Q33780649

Human immunodeficiency virus type 1 populations in blood and semen

Q33782102

Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

Q33784911

Genital tract sequestration of SIV following acute infection

Q33838382

The genotype of early-transmitting HIV gp120s promotes α (4) β(7)-reactivity, revealing α (4) β(7) +/CD4+ T cells as key targets in mucosal transmission

Q33839456

Analysis of human immunodeficiency virus in semen: indications of a genetically distinct virus reservoir

Q33859471

A cladistic measure of gene flow inferred from the phylogenies of alleles

Q33955939

Molecular epidemiology of human immunodeficiency virus type 1 transmission in a heterosexual cohort of discordant couples in Zambia

Q34327190

Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes

Q34439417

Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments

Q34975321

Characterization of glycosylation profiles of HIV-1 transmitted/founder envelopes by mass spectrometry

Q35140429

Effect of serotesting with counselling on condom use and seroconversion among HIV discordant couples in Africa

Q35821445

Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1.

Q35852888

Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1.

Q35857191

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

Q36540055

Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1

Q36795889

Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

Q37145228

P433

issue

P407

language of work or name

English

Q1860

P921

main subject

HIV transmission

Q49029021

P304

page(s)

E1156-63

P577

publication date

2011-11-07

P1433

published in

Proceedings of the National Academy of Sciences of the United States of America

Q1146531

P1476

title

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

P478

volume

108

Reverse relations

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P819	ADS bibcode	2011PNAS..108E1156B
P356	DOI	10.1073/PNAS.1103764108
P932	PMC publication ID	3219102
P698	PubMed publication ID	22065783
P5875	ResearchGate publication ID	51779701