Clustering millions of tandem mass spectra

scientific article published on 8 December 2007

Clustering millions of tandem mass spectra is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/PR070361E
P8608Fatcat IDrelease_rax2ittfofcnrn2s4iyyezdiem
P932PMC publication ID2533155
P698PubMed publication ID18067247
P5875ResearchGate publication ID5781569

P50authorPavel A. PevznerQ4262009
Richard D. SmithQ7325058
Nuno BandeiraQ98513835
P2093author name stringZhouxin Shen
Steven P Briggs
Ari M Frank
Stephen Tanner
P2860cites workSequence tag identification of intact proteins by matching tanden mass spectral data against sequence data basesQ24629993
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Error-tolerant identification of peptides in sequence databases by peptide sequence tagsQ28306769
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Improving large-scale proteomics by clustering of mass spectrometry data.Q30917029
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Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptidesQ33229418
Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filteringQ33235552
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Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor searchQ38442129
Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.Q42617751
Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysisQ42646073
Identification of post-translational modifications by blind search of mass spectra.Q42674213
Impact of ion trap tandem mass spectra variability on the identification of peptides.Q45959769
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InsPecT: identification of posttranslationally modified peptides from tandem mass spectraQ46259455
Accurate annotation of peptide modifications through unrestrictive database searchQ46397077
Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing.Q46456023
Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utilityQ46717073
Automatic quality assessment of peptide tandem mass spectra.Q48534080
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.Q50993792
MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.Q51970632
Comparing similar spectra: from similarity index to spectral contrast angleQ77450487
P433issue1
P304page(s)113-122
P577publication date2007-12-08
P1433published inJournal of Proteome ResearchQ3186939
P1476titleClustering millions of tandem mass spectra
P478volume7

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