Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants

scientific article published on 18 April 2013

Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1261/RNA.037903.112
P932PMC publication ID3683905
P698PubMed publication ID23598527
P5875ResearchGate publication ID236227676

P50authorXinshu XiaoQ55154862
P2093author name stringJae-Hyung Lee
Jason K Ang
P2860cites workVery few RNA and DNA sequence differences in the human transcriptomeQ21135000
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
High levels of RNA-editing site conservation amongst 15 laboratory mouse strainsQ21184002
Developmental modulation of GABA(A) receptor function by RNA editingQ24652461
Fast and accurate short read alignment with Burrows-Wheeler transformQ24653853
BLAT—The BLAST-Like Alignment ToolQ24682492
Personal omics profiling reveals dynamic molecular and medical phenotypesQ29614800
RNA editing in the human ENCODE RNA-seq dataQ30562419
Identification and correction of systematic error in high-throughput sequence dataQ31041859
Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.Q33440175
Comprehensive comparative analysis of strand-specific RNA sequencing methodsQ33658471
Improving RNA-Seq expression estimates by correcting for fragment biasQ33848556
Strand-specific deep sequencing of the transcriptomeQ33940980
High-throughput illumina strand-specific RNA sequencing library preparationQ33978056
Computation for ChIP-seq and RNA-seq studiesQ33999125
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptomeQ34156814
A-to-I RNA editing and human diseaseQ34162058
RNA editing underlies temperature adaptation in K+ channels from polar octopusesQ34245115
Identifying RNA editing sites using RNA sequencing data aloneQ34537341
RNA editing generates tissue-specific sodium channels with distinct gating propertiesQ34731490
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencingQ34983645
Widespread RNA and DNA sequence differences in the human transcriptome.Q35479706
Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissuesQ35842534
Altered adenosine-to-inosine RNA editing in human cancerQ36098271
RNA editing of protein sequences: a rare event in human transcriptomesQ36183561
Limited RNA editing in exons of mouse liver and adiposeQ36709919
mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortexQ36721573
Accurate identification of human Alu and non-Alu RNA editing sitesQ36871571
A-to-I RNA editing and cancer: from pathology to basic scienceQ37256306
Transcriptome analysis by strand-specific sequencing of complementary DNA.Q37393534
Accurate identification of A-to-I RNA editing in human by transcriptome sequencingQ39465344
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".Q40583039
Local and global factors affecting RNA sequencing analysis.Q42772824
Is abundant A-to-I RNA editing primate-specific?Q45231579
Lack of evidence for existence of noncanonical RNA editingQ46138413
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".Q46165135
Deregulation of the A-to-I RNA editing mechanism in psychiatric disorders.Q50784007
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"Q83669194
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectRNA designQ55213896
RNA analysisQ95588220
P304page(s)725-732
P577publication date2013-04-18
P1433published inRNAQ7277164
P1476titleAnalysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants
P478volume19

Reverse relations

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